RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 GOLGA8CPA6NN73 597 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 ADAM12O43184 909 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 SEPT4O43236 478 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 STAMBPO95630 424 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 C1RP00736 705 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 IGLV3-27P01718 113 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 CKBP12277 381 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 STT3AP46977 705 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 GNA12Q03113 381 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 PRSS55Q6UWB4 352 aaPredicted RBP12.78□□□□□ -0.36
LDLR-207ENST00000558013 ZBTB46Q86UZ6 589 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 RIN3Q8TB24 985 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 DDI1Q8WTU0 396 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 FUBP3Q96I24 572 aaKnown RBP eCLIP12.78□□□□□ -0.36
LDLR-207ENST00000558013 DCUN1D5Q9BTE7 237 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 CCDC68Q9H2F9 335 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 LTB4R2Q9NPC1 389 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 NLE1Q9NVX2 485 aaPredicted RBP12.78□□□□□ -0.36
LDLR-207ENST00000558013 FNIP2Q9P278 1114 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 PCTPQ9UKL6 214 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 MTMR11A4FU01 709 aa12.77□□□□□ -0.36
LDLR-207ENST00000558013 B4GAT1O43505 415 aa12.77□□□□□ -0.36
LDLR-207ENST00000558013 KATNA1O75449 491 aa12.77□□□□□ -0.36
LDLR-207ENST00000558013 KLKB1P03952 638 aa12.77□□□□□ -0.36
LDLR-207ENST00000558013 PCNAP12004 261 aa12.77□□□□□ -0.36
LDLR-207ENST00000558013 HSD17B1P14061 328 aa12.77□□□□□ -0.36
LDLR-207ENST00000558013 PSMA4P25789 261 aaKnown RBP12.77□□□□□ -0.36
LDLR-207ENST00000558013 CA5AP35218 305 aa12.77□□□□□ -0.36
LDLR-207ENST00000558013 GGT5P36269 586 aa12.77□□□□□ -0.36
LDLR-207ENST00000558013 ALDH3B2P48448 385 aa12.77□□□□□ -0.36
LDLR-207ENST00000558013 CCT8P50990 548 aa12.77□□□□□ -0.36
LDLR-207ENST00000558013 OR4D2P58180 307 aa12.77□□□□□ -0.36
LDLR-207ENST00000558013 SELPLGQ14242 412 aa12.77□□□□□ -0.36
LDLR-207ENST00000558013 CTSL3PQ5NE16 218 aa12.77□□□□□ -0.36
LDLR-207ENST00000558013 TTC33Q6PID6 262 aaPredicted RBP12.77□□□□□ -0.36
LDLR-207ENST00000558013 MAGEE2Q8TD90 523 aaPredicted RBP12.77□□□□□ -0.36
LDLR-207ENST00000558013 MYRFLQ96LU7 910 aa12.77□□□□□ -0.36
LDLR-207ENST00000558013 PPM1MQ96MI6 270 aa12.77□□□□□ -0.36
LDLR-207ENST00000558013 ZNF599Q96NL3 588 aa12.77□□□□□ -0.36
LDLR-207ENST00000558013 FAM193BQ96PV7 902 aaPredicted RBP12.77□□□□□ -0.36
LDLR-207ENST00000558013 DERL2Q9GZP9 239 aa12.77□□□□□ -0.36
LDLR-207ENST00000558013 CLK4Q9HAZ1 481 aaKnown RBP12.77□□□□□ -0.36
LDLR-207ENST00000558013 ACTR3BQ9P1U1 418 aa12.77□□□□□ -0.36
LDLR-207ENST00000558013 RSL24D1Q9UHA3 163 aaKnown RBP12.77□□□□□ -0.36
LDLR-207ENST00000558013 A0A1W2PP18 115 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 LCHNA4D1U4 455 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 F5H5T6 163 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 SNAP29O95721 258 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 RPS17P08708 135 aaKnown RBP12.77□□□□□ -0.37
LDLR-207ENST00000558013 IDO1P14902 403 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 ITGB6P18564 788 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 FASP25445 335 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 MC4RP32245 332 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 PIK3CGP48736 1102 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 DGKQP52824 942 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 RAD51Q06609 339 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 MERTKQ12866 999 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 ZRANB3Q5FWF4 1079 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 NANOGP8Q6NSW7 305 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 LETMD1Q6P1Q0 360 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 Q6ZSR9 355 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 SLC24A5Q71RS6 500 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 FATE1Q969F0 183 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 ZUFSPQ96AP4 578 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 LINGO1Q96FE5 620 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 KCTD14Q9BQ13 255 aaPredicted RBP12.77□□□□□ -0.37
LDLR-207ENST00000558013 NANOGQ9H9S0 305 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 IL37Q9NZH6 218 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 ATXN10Q9UBB4 475 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 FAM92AA1XBS5 289 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 KLHL33A6NCF5 533 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 BBIP1A8MTZ0 92 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 H0YJX3 145 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 SNAP91O60641 907 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 MATN4O95460 622 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 PYGLP06737 847 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 ATF6P18850 670 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 IL10P22301 178 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 MAPK10P53779 464 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 KCNK10P57789 538 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 MTPNP58546 118 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 ERVPABLB-1P60509 514 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 RCAN2Q14206 197 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 ZIK1Q3SY52 487 aaPredicted RBP12.77□□□□□ -0.37
LDLR-207ENST00000558013 OTUD3Q5T2D3 398 aaPredicted RBP12.77□□□□□ -0.37
LDLR-207ENST00000558013 MFSD14CQ5VZR4 134 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 LCN8Q6JVE9 175 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 FNDC5Q8NAU1 212 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 PROKR1Q8TCW9 393 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 GAB3Q8WWW8 586 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 CINPQ9BW66 212 aaPredicted RBP12.77□□□□□ -0.37
LDLR-207ENST00000558013 CD274Q9NZQ7 290 aa12.77□□□□□ -0.37
LDLR-207ENST00000558013 H3BNC9 293 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 SLC22A3O75751 556 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 RSL1D1O76021 490 aaKnown RBP12.76□□□□□ -0.37
LDLR-207ENST00000558013 CNPP09543 421 aaKnown RBP12.76□□□□□ -0.37
LDLR-207ENST00000558013 IRF1P10914 325 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 OGNP20774 298 aaKnown RBP12.76□□□□□ -0.37
LDLR-207ENST00000558013 RANBP1P43487 201 aa12.76□□□□□ -0.37
LDLR-207ENST00000558013 GALK1P51570 392 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms