RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 GIMAP2Q9UG22 337 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 BTRCQ9Y297 605 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 TLR6Q9Y2C9 796 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 PATJQ8NI35 1801 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 C17orf102A2RUQ5 167 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 CCDC162PA2VCL2 907 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 GMNNO75496 209 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 C1RP00736 705 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 ALPLP05186 524 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 IGFBP6P24592 240 aaPredicted RBP16.15■□□□□ 0.18
SHMT2-231ENST00000557433 HRH2P25021 359 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 GRIK1P39086 918 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 PBX3P40426 434 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 SLC10A7Q0GE19 358 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 PAGE3Q5JUK9 113 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 GLYATQ6IB77 296 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 C14orf80Q86SX3 495 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 ZFAND4Q86XD8 727 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 GALNT13Q8IUC8 556 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 MINDY2Q8NBR6 621 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 C3orf58Q8NDZ4 430 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 OR56A4Q8NGH8 313 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 OR4L1Q8NH43 312 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 TANKQ92844 425 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 PABPC5Q96DU9 382 aaKnown RBP16.15■□□□□ 0.18
SHMT2-231ENST00000557433 HMCESQ96FZ2 354 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 GLT1D1Q96MS3 346 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 RNF145Q96MT1 663 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 CCDC115Q96NT0 180 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 NSUN5Q96P11 429 aaKnown RBP16.15■□□□□ 0.18
SHMT2-231ENST00000557433 MTG1Q9BT17 334 aaPredicted RBP16.15■□□□□ 0.18
SHMT2-231ENST00000557433 UGT2B28Q9BY64 529 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 RAD21L1Q9H4I0 556 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 FANCEQ9HB96 536 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 VPS9D1Q9Y2B5 631 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 AP3M1Q9Y2T2 418 aa16.15■□□□□ 0.18
SHMT2-231ENST00000557433 MOXD2PA6NHM9 499 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 H3BMM5 538 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 KPNA4O00629 521 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-231ENST00000557433 PPP6CO00743 305 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 SERPINB7O75635 380 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 ANXA6P08133 673 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 CD247P20963 164 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 CD9P21926 228 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 MATN1P21941 496 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 ETFBP38117 255 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 PSMD7P51665 324 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 TSPY1Q01534 308 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 GSTM4Q03013 218 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 CHRNB3Q05901 458 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 NR1D2Q14995 579 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 EML3Q32P44 896 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 GTF2IRD2BQ6EKJ0 949 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 GPR142Q7Z601 462 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 GTF2IRD2Q86UP8 949 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 HOMEZQ8IX15 550 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 SVOPLQ8N434 492 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 MUS81Q96NY9 551 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 KCNA7Q96RP8 456 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 FEM1AQ9BSK4 669 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 BEGAINQ9BUH8 593 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 NAA50Q9GZZ1 169 aaKnown RBP16.14■□□□□ 0.17
SHMT2-231ENST00000557433 USE1Q9NZ43 259 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 PCDHGA4Q9Y5G9 962 aa16.14■□□□□ 0.17
SHMT2-231ENST00000557433 M0QZ92 97 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 M0QZQ0 153 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 MSI1O43347 362 aaKnown RBP16.13■□□□□ 0.17
SHMT2-231ENST00000557433 NCK1P16333 377 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 ZNF182P17025 639 aaPredicted RBP16.13■□□□□ 0.17
SHMT2-231ENST00000557433 CRHBPP24387 322 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 HOXC8P31273 242 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 PLCL1Q15111 1095 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 PARP15Q460N3 678 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 TFAP2DQ7Z6R9 452 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 SCD5Q86SK9 330 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 ZC3H7AQ8IWR0 971 aaKnown RBP16.13■□□□□ 0.17
SHMT2-231ENST00000557433 ZNF683Q8IZ20 524 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 OR8J3Q8NGG0 315 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 SCAMP5Q8TAC9 235 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 SNX19Q92543 992 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 VPS33AQ96AX1 596 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 SLC39A13Q96H72 371 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 ZNF347Q96SE7 839 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 POLR1EQ9GZS1 481 aaKnown RBP16.13■□□□□ 0.17
SHMT2-231ENST00000557433 NTN4Q9HB63 628 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 HEBP1Q9NRV9 189 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 IGLV3-10A0A075B6K4 115 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 OR51F1A6NGY5 319 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 H0Y858 1186 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 BOLA2-SMG1P6H3BVE0 249 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 UPK1AO00322 258 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 TNFRSF10BO14763 440 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 TBC1D4O60343 1298 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 ECI2O75521 394 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 RHOBTB1O94844 696 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 CDH3P22223 829 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 CPT1AP50416 773 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 MAXP61244 160 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 UFM1P61960 85 aa16.13■□□□□ 0.17
SHMT2-231ENST00000557433 ZNF846Q147U1 533 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms