RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 PEX6Q13608 980 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 ITGA9Q13797 1035 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 SPIDRQ14159 915 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 LONRF2Q1L5Z9 754 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 ISXQ2M1V0 245 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 DRICH1Q6PGQ1 229 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-219ENST00000555563 ZNF438Q7Z4V0 828 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 SPRED1Q7Z699 444 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 LRRTM4Q86VH4 590 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 ZNF547Q8IVP9 402 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 SLC35F6Q8N357 371 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 ARL14Q8N4G2 192 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 Q8N9G6 341 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-219ENST00000555563 DDHD1Q8NEL9 900 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 OR13C4Q8NGS5 318 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 WDR48Q8TAF3 677 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 GDAP1Q8TB36 358 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 SLC37A2Q8TED4 501 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 MAIP1Q8WWC4 291 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 UGT1A7Q9HAW7 530 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 UGT1A10Q9HAW8 530 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 UGT1A8Q9HAW9 530 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 ETNK1Q9HBU6 452 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 TRMT1Q9NXH9 659 aaKnown RBP13.55□□□□□ -0.24
SHMT2-219ENST00000555563 TBC1D29Q9UFV1 150 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 APPL1Q9UKG1 709 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 ZKSCAN5Q9Y2L8 839 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 CEP295Q9C0D2 2601 aa13.55□□□□□ -0.24
SHMT2-219ENST00000555563 A0A1W2PQM1 296 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 A6NCN8 305 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 SRRM3A6NNA2 597 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-219ENST00000555563 ERI2A8K979 691 aaKnown RBP13.54□□□□□ -0.24
SHMT2-219ENST00000555563 D6RAR5 112 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 PSMD3O43242 534 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 LDB2O43679 373 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 SRP72O76094 671 aaKnown RBP13.54□□□□□ -0.24
SHMT2-219ENST00000555563 CDK14O94921 469 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 PNLIPP16233 465 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 TPH1P17752 444 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 FDFT1P37268 417 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 TMPRSS15P98073 1019 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 XIAPP98170 497 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 PDE1BQ01064 536 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 CYP4F3Q08477 520 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 SEMA5AQ13591 1074 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 SEPT6Q14141 434 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 POU6F1Q14863 301 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 NR1D2Q14995 579 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 INSCQ1MX18 579 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 GPRC6AQ5T6X5 926 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 MICALCLQ6ZW33 695 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 PROSER1Q86XN7 944 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 TRAPPC5Q8IUR0 188 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 PRELID2Q8N945 189 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 RASGEF1AQ8N9B8 481 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 OR52K1Q8NGK4 314 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 DNAJC1Q96KC8 554 aaKnown RBP13.54□□□□□ -0.24
SHMT2-219ENST00000555563 GFM1Q96RP9 751 aaKnown RBP13.54□□□□□ -0.24
SHMT2-219ENST00000555563 ZCCHC2Q9C0B9 1178 aaKnown RBP13.54□□□□□ -0.24
SHMT2-219ENST00000555563 NRSN2Q9GZP1 204 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 LRRN3Q9H3W5 708 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 OSGEPL1Q9H4B0 414 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 RAB6BQ9NRW1 208 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 PAK5Q9P286 719 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 DKK4Q9UBT3 224 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 SLC23A2Q9UGH3 650 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 ENTPD2Q9Y5L3 495 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 AKAP13Q12802 2813 aa13.54□□□□□ -0.24
SHMT2-219ENST00000555563 ZZEF1O43149 2961 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 USP27XA6NNY8 438 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 RHPN2P1A8MT19 583 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 E7EVH7 732 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 TAF4O00268 1085 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 SNX2O60749 519 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 RPL22P35268 128 aaKnown RBP13.53□□□□□ -0.24
SHMT2-219ENST00000555563 KCNJ1P48048 391 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 LMAN1P49257 510 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 TMEM115Q12893 351 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-219ENST00000555563 NFATC2Q13469 925 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 BIRC2Q13490 618 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 GTF2H3Q13889 308 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 RTP5Q14D33 572 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 KCTD19Q17RG1 926 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-219ENST00000555563 LDLRAP1Q5SW96 308 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 B3GNT8Q7Z7M8 397 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 LINC00523Q86TU6 105 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 RASGEF1CQ8N431 466 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 SFRP1Q8N474 314 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 ZNF398Q8TD17 642 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 ATXN7L3BQ96GX2 97 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 MS4A14Q96JA4 679 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 C19orf43Q9BQ61 176 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 KLC4Q9NSK0 619 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 SMARCAL1Q9NZC9 954 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 ATXN7L1Q9ULK2 861 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-219ENST00000555563 DRG1Q9Y295 367 aaKnown RBP13.53□□□□□ -0.24
SHMT2-219ENST00000555563 DNAJC16Q9Y2G8 782 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 AK5Q9Y6K8 562 aa13.53□□□□□ -0.24
SHMT2-219ENST00000555563 IGF2RP11717 2491 aa13.52□□□□□ -0.24
SHMT2-219ENST00000555563 TRBV23OR9-2A0A075B6M9 112 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms