RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SLC8A2Q9UPR5 921 aa26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 YBX2Q9Y2T7 364 aaKnown RBP26.1■■□□□ 1.77
CCDC88C-205ENST00000553403 TMEM233B4DJY2 109 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 STX16-NPEPL1H3BU86 382 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 CDC7O00311 574 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 SDHDO14521 159 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 STX16O14662 325 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 MAGEC1O60732 1142 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 ADH1CP00326 375 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 SRPRAP08240 638 aaKnown RBP26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 COPAP53621 1224 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 INHBCP55103 352 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 EML3Q32P44 896 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 TXNDC11Q6PKC3 985 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 PHTF2Q8N3S3 785 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 EEF1AKMT1Q8WVE0 214 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 ZNF385DQ9H6B1 395 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 MEAF6Q9HAF1 191 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 NPEPPSL1A6NEC2 478 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 BTN3A1O00481 513 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 JUNP05412 331 aaKnown RBP26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 CHRM1P11229 460 aaPredicted RBP26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 DGKGP49619 791 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 TMC5Q6UXY8 1006 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 RPS27LQ71UM5 84 aaKnown RBP26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 CPNE9Q8IYJ1 553 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 GPR26Q8NDV2 337 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 ACTRT2Q8TDY3 377 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 KLHL32Q96NJ5 620 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 PLA2G4CQ9UP65 541 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 TRAF6Q9Y4K3 522 aa26.09■■□□□ 1.77
CCDC88C-205ENST00000553403 TSPAN11A1L157 253 aa26.08■■□□□ 1.77
CCDC88C-205ENST00000553403 UBFD1O14562 309 aaKnown RBP26.08■■□□□ 1.77
CCDC88C-205ENST00000553403 TRIM24O15164 1050 aa26.08■■□□□ 1.77
CCDC88C-205ENST00000553403 CA5AP35218 305 aa26.08■■□□□ 1.77
CCDC88C-205ENST00000553403 PGM1P36871 562 aa26.08■■□□□ 1.77
CCDC88C-205ENST00000553403 PTSQ03393 145 aa26.08■■□□□ 1.77
CCDC88C-205ENST00000553403 BTKQ06187 659 aa26.08■■□□□ 1.77
CCDC88C-205ENST00000553403 MACC1Q6ZN28 852 aa26.08■■□□□ 1.77
CCDC88C-205ENST00000553403 Q7L0L9 218 aa26.08■■□□□ 1.77
CCDC88C-205ENST00000553403 NXPE1Q8N323 547 aa26.08■■□□□ 1.77
CCDC88C-205ENST00000553403 CEP70Q8NHQ1 597 aa26.08■■□□□ 1.77
CCDC88C-205ENST00000553403 RSPRY1Q96DX4 576 aa26.08■■□□□ 1.77
CCDC88C-205ENST00000553403 PPP1R36Q96LQ0 422 aa26.08■■□□□ 1.77
CCDC88C-205ENST00000553403 PLEKHG4BQ96PX9 1271 aa26.08■■□□□ 1.77
CCDC88C-205ENST00000553403 C1QTNF3Q9BXJ4 246 aa26.08■■□□□ 1.77
CCDC88C-205ENST00000553403 TNFRSF12AQ9NP84 129 aa26.08■■□□□ 1.77
CCDC88C-205ENST00000553403 SLC27A6Q9Y2P4 619 aa26.08■■□□□ 1.77
CCDC88C-205ENST00000553403 A8MX80 341 aa26.07■■□□□ 1.76
CCDC88C-205ENST00000553403 FGF4P08620 206 aa26.07■■□□□ 1.76
CCDC88C-205ENST00000553403 UGT1A6P19224 532 aa26.07■■□□□ 1.76
CCDC88C-205ENST00000553403 UGT1A1P22309 533 aa26.07■■□□□ 1.76
CCDC88C-205ENST00000553403 UGT1A4P22310 534 aa26.07■■□□□ 1.76
CCDC88C-205ENST00000553403 LHCGRP22888 699 aa26.07■■□□□ 1.76
CCDC88C-205ENST00000553403 UGT1A3P35503 534 aa26.07■■□□□ 1.76
CCDC88C-205ENST00000553403 UGT1A5P35504 534 aa26.07■■□□□ 1.76
CCDC88C-205ENST00000553403 NRIP1P48552 1158 aa26.07■■□□□ 1.76
CCDC88C-205ENST00000553403 NXNQ6DKJ4 435 aa26.07■■□□□ 1.76
CCDC88C-205ENST00000553403 CYB5D2Q8WUJ1 264 aa26.07■■□□□ 1.76
CCDC88C-205ENST00000553403 SARS2Q9NP81 518 aaKnown RBP26.07■■□□□ 1.76
CCDC88C-205ENST00000553403 MRGBPQ9NV56 204 aa26.07■■□□□ 1.76
CCDC88C-205ENST00000553403 B4GALT6Q9UBX8 382 aa26.07■■□□□ 1.76
CCDC88C-205ENST00000553403 IQCF5A8MTL0 148 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 CYP2A6P11509 494 aaPredicted RBP26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 COX4I1P13073 169 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 CPOXP36551 454 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 RAP1GDS1P52306 607 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 MXRA7P84157 204 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 ANKS6Q68DC2 871 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 GPSM1Q86YR5 675 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 CLYBLQ8N0X4 340 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 FBXO27Q8NI29 283 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 BPIFB1Q8TDL5 484 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 PBXIP1Q96AQ6 731 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 ULK4Q96C45 1275 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 LRIG1Q96JA1 1093 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 BOCQ9BWV1 1114 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 WASF2Q9Y6W5 498 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 TTC34A8MYJ7 566 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 SIX3O95343 332 aaPredicted RBP26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 RPS17P08708 135 aaKnown RBP26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 C1SP09871 688 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 ZNF30P17039 623 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 CCND1P24385 295 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 NFKBIAP25963 317 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 KCNC3Q14003 757 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 NPAS3Q8IXF0 933 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 HCAR2Q8TDS4 363 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 CIPCQ9C0C6 399 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 DZANK1Q9NVP4 752 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 ZDHHC3Q9NYG2 299 aa26.06■■□□□ 1.76
CCDC88C-205ENST00000553403 BPTFQ12830 3046 aa26.05■■□□□ 1.76
CCDC88C-205ENST00000553403 CHUKO15111 745 aa26.05■■□□□ 1.76
CCDC88C-205ENST00000553403 CDK14O94921 469 aa26.05■■□□□ 1.76
CCDC88C-205ENST00000553403 NFATC1O95644 943 aa26.05■■□□□ 1.76
CCDC88C-205ENST00000553403 PIK3R1P27986 724 aa26.05■■□□□ 1.76
CCDC88C-205ENST00000553403 EEF1DP29692 281 aaKnown RBP26.05■■□□□ 1.76
CCDC88C-205ENST00000553403 VIPR2P41587 438 aa26.05■■□□□ 1.76
CCDC88C-205ENST00000553403 SPINT3P49223 89 aa26.05■■□□□ 1.76
CCDC88C-205ENST00000553403 HERC3Q15034 1050 aa26.05■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms