RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 WFS1O76024 890 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 B3GALT4O96024 378 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 PYGLP06737 847 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 LINGO3P0C6S8 592 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 HOXC13P31276 330 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 FOLH1Q04609 750 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 LMAN2Q12907 356 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 NAIF1Q69YI7 327 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-215ENST00000552823 GAREM2Q75VX8 874 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 SYVN1Q86TM6 617 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 TRIM74Q86UV6 250 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 RETREG3Q86VR2 466 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 LILRA2Q8N149 483 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 SLAIN1Q8ND83 568 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 ACTRT2Q8TDY3 377 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 CANT1Q8WVQ1 401 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 EID2BQ96D98 161 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 FEM1CQ96JP0 617 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 ADGRE3Q9BY15 652 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 MRPL9Q9BYD2 267 aaKnown RBP5.54□□□□□ -1.52
LIMA1-215ENST00000552823 VCXQ9H320 206 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 CAAP1Q9H8G2 361 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 ZFYVE1Q9HBF4 777 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 ZNF212Q9UDV6 495 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 MBD1Q9UIS9 605 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-215ENST00000552823 LRCH1Q9Y2L9 728 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 INSL5Q9Y5Q6 135 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 SCN4AP35499 1836 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 SCN5AQ14524 2016 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 SZT2Q5T011 3432 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 PIKFYVEQ9Y2I7 2098 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 TGM5O43548 720 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 KDELR3O43731 214 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 CACNG3O60359 315 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 IGHA2P01877 340 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 MTHFD2P13995 350 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 MYOGP15173 224 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 XPAP23025 273 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-215ENST00000552823 NFKBIAP25963 317 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 MAPKAPK2P49137 400 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 HK3P52790 923 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 MTPNP58546 118 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 ABRQ12979 859 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 BLMHQ13867 455 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 ARTNQ5T4W7 220 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 AFMIDQ63HM1 303 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 CXorf57Q6NSI4 855 aaKnown RBP5.54□□□□□ -1.52
LIMA1-215ENST00000552823 SLC2A7Q6PXP3 512 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 SLC39A5Q6ZMH5 540 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 PQLC1Q8N2U9 271 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 KLHL23Q8NBE8 558 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 ZNF784Q8NCA9 323 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-215ENST00000552823 HMGCLL1Q8TB92 370 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 PBXIP1Q96AQ6 731 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 MYO19Q96H55 970 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 CNDP1Q96KN2 507 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 PRPF18Q99633 342 aaKnown RBP5.54□□□□□ -1.52
LIMA1-215ENST00000552823 TUBB1Q9H4B7 451 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 SYTL2Q9HCH5 934 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 SPG21Q9NZD8 308 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 MTRRQ9UBK8 725 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 LSM7Q9UK45 103 aaKnown RBP5.54□□□□□ -1.52
LIMA1-215ENST00000552823 POLR3HQ9Y535 204 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-215ENST00000552823 GREB1Q4ZG55 1949 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 GRXCR1A8MXD5 290 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 LUC7L3O95232 432 aaKnown RBP5.54□□□□□ -1.52
LIMA1-215ENST00000552823 S100BP04271 92 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-215ENST00000552823 LYNP07948 512 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 HLA-EP13747 358 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 VCLP18206 1134 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 CAPN3P20807 821 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 HNF1BP35680 557 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 CCNHP51946 323 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-215ENST00000552823 MTTPP55157 894 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 CDH15P55291 814 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 RPL38P63173 70 aaKnown RBP5.54□□□□□ -1.52
LIMA1-215ENST00000552823 TIAL1Q01085 375 aaKnown RBP eCLIP5.54□□□□□ -1.52
LIMA1-215ENST00000552823 SATB1Q01826 763 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 STX5Q13190 355 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 TBCCQ15814 346 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 PHKG1Q16816 387 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 IMPG1Q17R60 797 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 DGKKQ5KSL6 1271 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 SERPINA13PQ6UXR4 307 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 AURKBQ96GD4 344 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-215ENST00000552823 DCUN1D1Q96GG9 259 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 PLEKHG4BQ96PX9 1271 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 PHF12Q96QT6 1004 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 CWH43Q9H720 699 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 COQ10BQ9H8M1 238 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 INTS7Q9NVH2 962 aaKnown RBP5.54□□□□□ -1.52
LIMA1-215ENST00000552823 CACNA2D2Q9NY47 1150 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 CXXC1Q9P0U4 656 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-215ENST00000552823 VTI1BQ9UEU0 232 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 SSUH2Q9Y2M2 353 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 NDUFAF1Q9Y375 327 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 ZNF711Q9Y462 761 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 PRKAB1Q9Y478 270 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 NINQ8N4C6 2090 aa5.54□□□□□ -1.52
LIMA1-215ENST00000552823 WDR87Q6ZQQ6 2873 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms