RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 C9orf72Q96LT7 481 aa12.69□□□□□ -0.38
PTCH1-218ENST00000548945 ZNF830Q96NB3 372 aaPredicted RBP12.69□□□□□ -0.38
PTCH1-218ENST00000548945 ZFYVE1Q9HBF4 777 aa12.69□□□□□ -0.38
PTCH1-218ENST00000548945 TRIM39Q9HCM9 518 aa12.69□□□□□ -0.38
PTCH1-218ENST00000548945 APMAPQ9HDC9 416 aa12.69□□□□□ -0.38
PTCH1-218ENST00000548945 DTLQ9NZJ0 730 aa12.69□□□□□ -0.38
PTCH1-218ENST00000548945 UVRAGQ9P2Y5 699 aa12.69□□□□□ -0.38
PTCH1-218ENST00000548945 ATXN10Q9UBB4 475 aa12.69□□□□□ -0.38
PTCH1-218ENST00000548945 SYCE3A1L190 88 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 ZNF487B1APH4 448 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 CHUKO15111 745 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 MTA2O94776 668 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 PROSCO94903 275 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 SLC25A14O95258 325 aaPredicted RBP12.68□□□□□ -0.38
PTCH1-218ENST00000548945 JCHAINP01591 159 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 PRKAR1AP10644 381 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 ZNF8P17098 575 aaPredicted RBP12.68□□□□□ -0.38
PTCH1-218ENST00000548945 TCN2P20062 427 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 OAS2P29728 719 aaKnown RBP12.68□□□□□ -0.38
PTCH1-218ENST00000548945 MAPK9P45984 424 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 FOXK1P85037 733 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 GBE1Q04446 702 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 PPIDQ08752 370 aaKnown RBP12.68□□□□□ -0.38
PTCH1-218ENST00000548945 SLC10A2Q12908 348 aaPredicted RBP12.68□□□□□ -0.38
PTCH1-218ENST00000548945 SEPT6Q14141 434 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 IL11RAQ14626 422 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 SLC14A2Q15849 920 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 SKIDA1Q1XH10 827 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 TMEM26Q6ZUK4 368 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 VSIG1Q86XK7 387 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 RBM12BQ8IXT5 1001 aaKnown RBP12.68□□□□□ -0.38
PTCH1-218ENST00000548945 TRAM1L1Q8N609 369 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 CCNYQ8ND76 341 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 PLEKHG4BQ96PX9 1271 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 SRPK1Q96SB4 655 aaKnown RBP12.68□□□□□ -0.38
PTCH1-218ENST00000548945 TIMM29Q9BSF4 260 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 SPATA16Q9BXB7 569 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 TBC1D10AQ9BXI6 508 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 XPO4Q9C0E2 1151 aaKnown RBP12.68□□□□□ -0.38
PTCH1-218ENST00000548945 OR2AG1Q9H205 316 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 MAGEE1Q9HCI5 957 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 PRDM8Q9NQV8 689 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 KLC4Q9NSK0 619 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 CAPN11Q9UMQ6 739 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 KCTD3Q9Y597 815 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 RPS6KL1Q9Y6S9 549 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 CENPEQ02224 2701 aa12.68□□□□□ -0.38
PTCH1-218ENST00000548945 NOTCH2Q04721 2471 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 GOLGA6L3A6NEY3 463 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 PRR19A6NJB7 356 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 KMOO15229 486 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 VEGFDO43915 354 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 UBXN7O94888 489 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 VIPP01282 170 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 GSE1Q14687 1217 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 WASH2PQ6VEQ5 465 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 ADGRG6Q86SQ4 1221 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 UNC5BQ8IZJ1 945 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 CNTD1Q8N815 330 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 GLYATL1Q969I3 302 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 EID2BQ96D98 161 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 ABHD17AQ96GS6 310 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 RNF157Q96PX1 679 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 TRIB3Q96RU7 358 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 ULBP3Q9BZM4 244 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 OSGEPL1Q9H4B0 414 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 ZNF768Q9H5H4 540 aaKnown RBP12.67□□□□□ -0.38
PTCH1-218ENST00000548945 WASH6PQ9NQA3 447 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 POT1Q9NUX5 634 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 OGFRQ9NZT2 677 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 CTTNBP2NLQ9P2B4 639 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 KLHL3Q9UH77 587 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 NENFQ9UMX5 172 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 LUC7L2Q9Y383 392 aaKnown RBP12.67□□□□□ -0.38
PTCH1-218ENST00000548945 PCDHB3Q9Y5E6 796 aa12.67□□□□□ -0.38
PTCH1-218ENST00000548945 UNC79Q9P2D8 2635 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 SEC16AO15027 2179 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 CLEC18AA5D8T8 446 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 KCNK1O00180 336 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 RECKO95980 971 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 H2AFZP0C0S5 128 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 ZNF7P17097 686 aaPredicted RBP12.66□□□□□ -0.38
PTCH1-218ENST00000548945 KDELR1P24390 212 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 GJC1P36383 396 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 SLC19A1P41440 591 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 GFERP55789 205 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 TAS2R40P59535 323 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 TPM4P67936 248 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 FANCCQ00597 558 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 ZBTB17Q13105 803 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 UBAP2LQ14157 1087 aaKnown RBP12.66□□□□□ -0.38
PTCH1-218ENST00000548945 INSCQ1MX18 579 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 DEFB109BQ30KR1 87 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 LACTB2Q53H82 288 aaPredicted RBP12.66□□□□□ -0.38
PTCH1-218ENST00000548945 AGAP9Q5VTM2 703 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 CYB5D1Q6P9G0 228 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 ABRAXAS1Q6UWZ7 409 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 C6orf15Q6UXA7 325 aaPredicted RBP12.66□□□□□ -0.38
PTCH1-218ENST00000548945 CLEC18BQ6UXF7 455 aa12.66□□□□□ -0.38
PTCH1-218ENST00000548945 H2AFVQ71UI9 128 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms