RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 RPS6KL1Q9Y6S9 549 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 PCDH15Q96QU1 1955 aa13.63□□□□□ -0.23
PTCH1-213ENST00000546820 PTPRZ1P23471 2315 aaPredicted RBP13.62□□□□□ -0.23
PTCH1-213ENST00000546820 F8W8V4 182 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 EIF3HO15372 352 aaKnown RBP eCLIP13.62□□□□□ -0.23
PTCH1-213ENST00000546820 AQP9O43315 295 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 GRID2O43424 1007 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 NUAK1O60285 661 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 USP1O94782 785 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 VAPBO95292 243 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 GOT2P00505 430 aaKnown RBP13.62□□□□□ -0.23
PTCH1-213ENST00000546820 ALPPL2P10696 532 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 PGAM1P18669 254 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 EPHA8P29322 1005 aaPredicted RBP13.62□□□□□ -0.23
PTCH1-213ENST00000546820 GNPDA1P46926 289 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 ARSDP51689 593 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 IL9RQ01113 521 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 CBLBQ13191 982 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 SHBQ15464 509 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 PRRT3Q5FWE3 981 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 CES3Q6UWW8 571 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 MARK2Q7KZI7 788 aaKnown RBP13.62□□□□□ -0.23
PTCH1-213ENST00000546820 GKN2Q86XP6 184 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 NXPE1Q8N323 547 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 LMX1AQ8TE12 382 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 SAP25Q8TEE9 199 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 SETD7Q8WTS6 366 aaKnown RBP13.62□□□□□ -0.23
PTCH1-213ENST00000546820 MFSD3Q96ES6 412 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 TSPYL1Q9H0U9 437 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 FGF22Q9HCT0 170 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 MRPL40Q9NQ50 206 aaKnown RBP13.62□□□□□ -0.23
PTCH1-213ENST00000546820 CATSPERZQ9NTU4 200 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 ZDHHC3Q9NYG2 299 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 GRHL1Q9NZI5 618 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 KLF15Q9UIH9 416 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 CDV3Q9UKY7 258 aaKnown RBP13.62□□□□□ -0.23
PTCH1-213ENST00000546820 SUFUQ9UMX1 484 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 OAS3Q9Y6K5 1087 aaKnown RBP13.62□□□□□ -0.23
PTCH1-213ENST00000546820 FAM186AA6NE01 2351 aa13.62□□□□□ -0.23
PTCH1-213ENST00000546820 TRBV5-4A0A0C4DH59 114 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 SCAMP1O15126 338 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 KMOO15229 486 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 CD3EAPO15446 510 aaKnown RBP13.61□□□□□ -0.23
PTCH1-213ENST00000546820 FLRT2O43155 660 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 DNAJC6O75061 913 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 ANXA6P08133 673 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 ZNF8P17098 575 aaPredicted RBP13.61□□□□□ -0.23
PTCH1-213ENST00000546820 PMLP29590 882 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 ELK3P41970 407 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 GRK6P43250 576 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 ILF3Q12906 894 aaKnown RBP eCLIP13.61□□□□□ -0.23
PTCH1-213ENST00000546820 PDIA2Q13087 525 aaKnown RBP13.61□□□□□ -0.23
PTCH1-213ENST00000546820 THOC5Q13769 683 aaKnown RBP13.61□□□□□ -0.23
PTCH1-213ENST00000546820 LRP8Q14114 963 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 PYCR3Q53H96 274 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 SPANXN3Q5MJ09 141 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 ZNF648Q5T619 568 aaPredicted RBP13.61□□□□□ -0.23
PTCH1-213ENST00000546820 KIAA0930Q6ICG6 404 aaPredicted RBP13.61□□□□□ -0.23
PTCH1-213ENST00000546820 MRNIPQ6NTE8 343 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 LVRNQ6Q4G3 990 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 DBX2Q6ZNG2 339 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 LRRTM4Q86VH4 590 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 SERPINA9Q86WD7 417 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 IFT20Q8IY31 132 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 CALML6Q8TD86 181 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 IFT81Q8WYA0 676 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 SEC14L1Q92503 715 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 ZNF669Q96BR6 464 aaPredicted RBP13.61□□□□□ -0.23
PTCH1-213ENST00000546820 PDXPQ96GD0 296 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 OR2M4Q96R27 311 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 DUSP23Q9BVJ7 150 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 GSDMCQ9BYG8 508 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 SLC32A1Q9H598 525 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 ARFGAP3Q9NP61 516 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 MTRF1LQ9UGC7 380 aaKnown RBP13.61□□□□□ -0.23
PTCH1-213ENST00000546820 ZC3H7BQ9UGR2 993 aaKnown RBP13.61□□□□□ -0.23
PTCH1-213ENST00000546820 TMPRSS11EQ9UL52 423 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 GPR34Q9UPC5 381 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 DNMT3AQ9Y6K1 912 aaPredicted RBP13.61□□□□□ -0.23
PTCH1-213ENST00000546820 FAM169AQ9Y6X4 670 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 SCN8AQ9UQD0 1980 aa13.61□□□□□ -0.23
PTCH1-213ENST00000546820 KLHL33A6NCF5 533 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 OR51F1A6NGY5 319 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 TPP1O14773 563 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 CHUKO15111 745 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 TP73O15350 636 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 KCNJ13O60928 360 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 SDC3O75056 442 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 MTX2O75431 263 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 FUCA1P04066 466 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 CD59P13987 128 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 ATP1B2P14415 290 aaPredicted RBP13.6□□□□□ -0.23
PTCH1-213ENST00000546820 VCLP18206 1134 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 ACRV1P26436 265 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 FOXN2P32314 431 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 TTPAP49638 278 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 C1orf61Q13536 156 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 ITIH4Q14624 930 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 LONRF1Q17RB8 773 aa13.6□□□□□ -0.23
PTCH1-213ENST00000546820 MSS51Q4VC12 460 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms