RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 CCDC116Q8IYX3 515 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 SVOPQ8N4V2 548 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 GALNT11Q8NCW6 608 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 HIPK4Q8NE63 616 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 C7orf57Q8NEG2 295 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 TSPEARQ8WU66 669 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 LRTOMTQ8WZ04 291 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 FBXL8Q96CD0 374 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 SCLYQ96I15 445 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 SIGLEC10Q96LC7 697 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 HOPXQ9BPY8 73 aaPredicted RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 PNPOQ9NVS9 261 aa5.24□□□□□ -1.57
USP28-213ENST00000544967 CXXC1Q9P0U4 656 aaPredicted RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 NFKBIL1Q9UBC1 381 aaPredicted RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 TSR3Q9UJK0 312 aaKnown RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 KIAA0100Q14667 2235 aaKnown RBP5.24□□□□□ -1.57
USP28-213ENST00000544967 MTSS1O43312 755 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 TBC1D4O60343 1298 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 NPHS1O60500 1241 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 TRIM13O60858 407 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 STAG3L1P0CL83 205 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 CSH1P0DML2 217 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 CSH2P0DML3 217 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 IL10P22301 178 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 FASP25445 335 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 EIF2DP41214 584 aaKnown RBP5.23□□□□□ -1.57
USP28-213ENST00000544967 RPL14P50914 215 aaKnown RBP5.23□□□□□ -1.57
USP28-213ENST00000544967 C21orf58P58505 322 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 EIF3EP60228 445 aaKnown RBP5.23□□□□□ -1.57
USP28-213ENST00000544967 SP4Q02446 784 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 CYP24A1Q07973 514 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 FADDQ13158 208 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 NPTX1Q15818 432 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 SNRNP35Q16560 246 aaKnown RBP5.23□□□□□ -1.57
USP28-213ENST00000544967 RBM20Q5T481 1227 aaKnown RBP5.23□□□□□ -1.57
USP28-213ENST00000544967 LHFPL2Q6ZUX7 228 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 CAND1Q86VP6 1230 aaKnown RBP5.23□□□□□ -1.57
USP28-213ENST00000544967 KSR1Q8IVT5 923 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 NRSN1Q8IZ57 195 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 SCML4Q8N228 414 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 RHOXF1Q8NHV9 184 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 SETD6Q8TBK2 473 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 RCN3Q96D15 328 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 FAM84AQ96KN4 292 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 RIPOR3Q96MK2 946 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 CPNE1Q99829 537 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 HERC2P3Q9BVR0 1158 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 EPS8L2Q9H6S3 715 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 LRRC4Q9HBW1 653 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 IFT80Q9P2H3 777 aaPredicted RBP5.23□□□□□ -1.57
USP28-213ENST00000544967 MTRRQ9UBK8 725 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 CDYLQ9Y232 598 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 YBX2Q9Y2T7 364 aaKnown RBP5.23□□□□□ -1.57
USP28-213ENST00000544967 INSL6Q9Y581 213 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 CCDC195A0A1B0GUA6 201 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 TCRBV7S3A2A0A539 114 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 SOCS2O14508 198 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 PTGESO14684 152 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 AIM2O14862 343 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 BANF1O75531 89 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 EPN2O95208 641 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 IFNB1P01574 187 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 HOXB1P14653 301 aaPredicted RBP5.23□□□□□ -1.57
USP28-213ENST00000544967 MATN1P21941 496 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 PRKACBP22694 351 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 XPAP23025 273 aaPredicted RBP5.23□□□□□ -1.57
USP28-213ENST00000544967 MZF1P28698 734 aaPredicted RBP5.23□□□□□ -1.57
USP28-213ENST00000544967 DPP6P42658 865 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 KPNA1P52294 538 aaPredicted RBP5.23□□□□□ -1.57
USP28-213ENST00000544967 GDF10P55107 478 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 CDH15P55291 814 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 TPD52P55327 224 aaPredicted RBP5.23□□□□□ -1.57
USP28-213ENST00000544967 SRP54P61011 504 aaKnown RBP5.23□□□□□ -1.57
USP28-213ENST00000544967 DEFB103AP81534 67 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 NFKB2Q00653 900 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 GNA12Q03113 381 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 MVKQ03426 396 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 FAPQ12884 760 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 PRKG2Q13237 762 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 POU6F1Q14863 301 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 PPA1Q15181 289 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 NRF1Q16656 503 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 ATF7IP2Q5U623 682 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 DNAJC24Q6P3W2 148 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.23□□□□□ -1.57
USP28-213ENST00000544967 SLC16A12Q6ZSM3 486 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 DNAJB7Q7Z6W7 309 aaPredicted RBP5.23□□□□□ -1.57
USP28-213ENST00000544967 SPATA2LQ8IUW3 424 aaPredicted RBP5.23□□□□□ -1.57
USP28-213ENST00000544967 CCDC28AQ8IWP9 274 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 ZCCHC7Q8N3Z6 543 aaKnown RBP5.23□□□□□ -1.57
USP28-213ENST00000544967 IL17RDQ8NFM7 739 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 OSCP1Q8WVF1 389 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 HDAC11Q96DB2 347 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 MYRFLQ96LU7 910 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 SLC25A23Q9BV35 468 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 EMILIN2Q9BXX0 1053 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 ASB7Q9H672 318 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 SYBUQ9NX95 663 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 DTLQ9NZJ0 730 aa5.23□□□□□ -1.57
USP28-213ENST00000544967 TBC1D14Q9P2M4 693 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms