RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	GNPDA1	P46926	289 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	NXPH1	P58417	271 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	GPX6	P59796	221 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	SRP54	P61011	504 aa	Known RBP	10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	CTBP1	Q13363	440 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	MAP9	Q49MG5	647 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	TPRG1L	Q5T0D9	272 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	RNF187	Q5TA31	235 aa	Predicted RBP	10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	TMEM220	Q6QAJ8	160 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	MACC1	Q6ZN28	852 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	ADGRG6	Q86SQ4	1221 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	PARG	Q86W56	976 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	RELL1	Q8IUW5	271 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	DENND6A	Q8IWF6	608 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	ABCA7	Q8IZY2	2146 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	SLC22A18AS	Q8N1D0	253 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	DDHD1	Q8NEL9	900 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	OR56A4	Q8NGH8	313 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	GPR150	Q8NGU9	434 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	FBF1	Q8TES7	1133 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	UBLCP1	Q8WVY7	318 aa	Predicted RBP	10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	TSACC	Q96A04	125 aa	Predicted RBP	10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	MRRF	Q96E11	262 aa	Known RBP	10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	SGSM3	Q96HU1	749 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	COX14	Q96I36	57 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	GTPBP2	Q9BX10	602 aa	Known RBP	10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	CARS2	Q9HA77	564 aa	Known RBP	10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	PLAC1	Q9HBJ0	212 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	CYP4F12	Q9HCS2	524 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	FSCN3	Q9NQT6	498 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	FBXO6	Q9NRD1	293 aa	Predicted RBP	10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	DNAJC28	Q9NX36	388 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	TXNDC16	Q9P2K2	825 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	ATXN10	Q9UBB4	475 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	FBXO5	Q9UKT4	447 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	VPS9D1	Q9Y2B5	631 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	SNX11	Q9Y5W9	270 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	OAS3	Q9Y6K5	1087 aa	Known RBP	10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	CACNA1H	O95180	2353 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	TRBV5-4	A0A0C4DH59	114 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	TCRBV9S1A1T	A0A576	114 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545		F8W8V4	182 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	OR1I1	O60431	355 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	ERLIN1	O75477	346 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	PIAS1	O75925	651 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	RASGRP1	O95267	797 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	CEACAM5	P06731	702 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	F7	P08709	466 aa	Predicted RBP	10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	CTSE	P14091	401 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	ATP1B2	P14415	290 aa	Predicted RBP	10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	ZNF8	P17098	575 aa	Predicted RBP	10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	JUND	P17535	347 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	OGN	P20774	298 aa	Known RBP	10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	FMO4	P31512	558 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	NSG1	P42857	185 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	SLC1A2	P43004	574 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	BLK	P51451	505 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	EIF3B	P55884	814 aa	Known RBP	10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	IRX4	P78413	519 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	MPP1	Q00013	466 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	FRG1	Q14331	258 aa	Known RBP	10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	FZD2	Q14332	565 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	SEMA3A	Q14563	771 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	ITIH4	Q14624	930 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	TCEA2	Q15560	299 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	KHDC1	Q4VXA5	237 aa	Known RBP	10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	TEDDM1	Q5T9Z0	273 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	PEAR1	Q5VY43	1037 aa	Predicted RBP	10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	PTRHD1	Q6GMV3	140 aa	Known RBP	10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	EMB	Q6PCB8	327 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	SLC23A3	Q6PIS1	610 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	CRTC3	Q6UUV7	619 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	IL27RA	Q6UWB1	636 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	SPATS2	Q86XZ4	545 aa	Known RBP	10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	GALNT13	Q8IUC8	556 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	CILP2	Q8IUL8	1156 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	TRAPPC5	Q8IUR0	188 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	RBFA	Q8N0V3	343 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	PPM1N	Q8N819	430 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	RASGEF1A	Q8N9B8	481 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	MYRIP	Q8NFW9	859 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	NAT14	Q8WUY8	206 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	OR1E3	Q8WZA6	343 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	SGF29	Q96ES7	293 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	TCF12	Q99081	682 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	BOC	Q9BWV1	1114 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	SLC13A1	Q9BZW2	595 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	CLPB	Q9H078	707 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	CCDC68	Q9H2F9	335 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	FGF22	Q9HCT0	170 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	MRPL40	Q9NQ50	206 aa	Known RBP	10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	MOCS1	Q9NZB8	636 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	VPS18	Q9P253	973 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	SLC17A6	Q9P2U8	582 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	RAPGEFL1	Q9UHV5	662 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	RAB21	Q9UL25	225 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	SLC17A4	Q9Y2C5	497 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	CRYL1	Q9Y2S2	319 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	PRKAB1	Q9Y478	270 aa		10.04	□□□□□ -0.8
CPSF7-221	ENST00000543545	ZNF318	Q5VUA4	2279 aa		10.03	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms