RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 ZDHHC3Q9NYG2 299 aa16.95■□□□□ 0.3
LIG1-204ENST00000542460 IL1RAPL1Q9NZN1 696 aa16.95■□□□□ 0.3
LIG1-204ENST00000542460 KLQ9UEF7 1012 aa16.95■□□□□ 0.3
LIG1-204ENST00000542460 GPR179Q6PRD1 2367 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 GPR89AB7ZAQ6 455 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 MTX2O75431 263 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 CDK14O94921 469 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 TUBBP07437 444 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 GPR89BP0CG08 455 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 MYBL2P10244 700 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 RALBP11234 206 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 SSTR1P30872 391 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 AKT1P31749 480 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 POLD2P49005 469 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 TTPAP49638 278 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 SRP54P61011 504 aaKnown RBP16.94■□□□□ 0.3
LIG1-204ENST00000542460 VSNL1P62760 191 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 PPARDQ03181 441 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 SPEM2Q0P670 501 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 DBN1Q16643 649 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 HSP90AA5PQ58FG0 334 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 ZNF648Q5T619 568 aaPredicted RBP16.94■□□□□ 0.3
LIG1-204ENST00000542460 CYS1Q717R9 158 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 ADGRG6Q86SQ4 1221 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 UNC5BQ8IZJ1 945 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 OTUD6BQ8N6M0 293 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 DCUN1D1Q96GG9 259 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 TCF12Q99081 682 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 FAM167BQ9BTA0 163 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 OR2AG1Q9H205 316 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 RMI1Q9H9A7 625 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 LRRC4CQ9HCJ2 640 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 PPANQ9NQ55 473 aaKnown RBP16.94■□□□□ 0.3
LIG1-204ENST00000542460 SEMA4GQ9NTN9 838 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 MOCS1Q9NZB8 636 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 MARCH4Q9P2E8 410 aaPredicted RBP16.94■□□□□ 0.3
LIG1-204ENST00000542460 ATXN10Q9UBB4 475 aa16.94■□□□□ 0.3
LIG1-204ENST00000542460 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.94■□□□□ 0.3
LIG1-204ENST00000542460 IGLV3-16A0A075B6K0 115 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 PRSS38A1L453 326 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 CFAP99D6REC4 459 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 PFDN6O15212 129 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 DFNA5O60443 496 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 SPAG6O75602 509 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 CSF2P04141 144 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 FAM153BP0C7A2 387 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 ERVK-10P10266 1014 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 MSH3P20585 1137 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 OGNP20774 298 aaKnown RBP16.93■□□□□ 0.3
LIG1-204ENST00000542460 PMLP29590 882 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 BLKP51451 505 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 GPX6P59796 221 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 EIF2B5Q13144 721 aaKnown RBP16.93■□□□□ 0.3
LIG1-204ENST00000542460 GTF2H3Q13889 308 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 SEMA3AQ14563 771 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 ITIH4Q14624 930 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 SMAD1Q15797 465 aaKnown RBP16.93■□□□□ 0.3
LIG1-204ENST00000542460 CSRP2Q16527 193 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 KYNUQ16719 465 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 FAM153CQ494X1 144 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 KHDC1Q4VXA5 237 aaKnown RBP16.93■□□□□ 0.3
LIG1-204ENST00000542460 TCEAL6Q6IPX3 200 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 CAPN12Q6ZSI9 719 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 OXR1Q8N573 874 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 SCG3Q8WXD2 468 aaKnown RBP16.93■□□□□ 0.3
LIG1-204ENST00000542460 TCEAL3Q969E4 200 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 TSACCQ96A04 125 aaPredicted RBP16.93■□□□□ 0.3
LIG1-204ENST00000542460 SCARF2Q96GP6 870 aaPredicted RBP16.93■□□□□ 0.3
LIG1-204ENST00000542460 PARD6BQ9BYG5 372 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 FGF22Q9HCT0 170 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 FSCN3Q9NQT6 498 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 MOSPD1Q9UJG1 213 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 DGKBQ9Y6T7 804 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 BPTFQ12830 3046 aa16.93■□□□□ 0.3
LIG1-204ENST00000542460 ZNF106Q9H2Y7 1883 aaKnown RBP16.93■□□□□ 0.3
LIG1-204ENST00000542460 NUAK1O60285 661 aa16.92■□□□□ 0.3
LIG1-204ENST00000542460 IVLP07476 585 aa16.92■□□□□ 0.3
LIG1-204ENST00000542460 NSG1P42857 185 aa16.92■□□□□ 0.3
LIG1-204ENST00000542460 ARRB1P49407 418 aaPredicted RBP16.92■□□□□ 0.3
LIG1-204ENST00000542460 HK3P52790 923 aa16.92■□□□□ 0.3
LIG1-204ENST00000542460 ZNF423Q2M1K9 1284 aa16.92■□□□□ 0.3
LIG1-204ENST00000542460 ALG11Q2TAA5 492 aa16.92■□□□□ 0.3
LIG1-204ENST00000542460 HLA-BQ31612 363 aa16.92■□□□□ 0.3
LIG1-204ENST00000542460 ZNF470Q6ECI4 717 aa16.92■□□□□ 0.3
LIG1-204ENST00000542460 ZNF449Q6P9G9 518 aa16.92■□□□□ 0.3
LIG1-204ENST00000542460 TRMT10BQ6PF06 316 aaKnown RBP16.92■□□□□ 0.3
LIG1-204ENST00000542460 RD3Q7Z3Z2 195 aa16.92■□□□□ 0.3
LIG1-204ENST00000542460 LDB1Q86U70 411 aaPredicted RBP16.92■□□□□ 0.3
LIG1-204ENST00000542460 CILP2Q8IUL8 1156 aa16.92■□□□□ 0.3
LIG1-204ENST00000542460 HID1Q8IV36 788 aa16.92■□□□□ 0.3
LIG1-204ENST00000542460 GSPT2Q8IYD1 628 aaKnown RBP16.92■□□□□ 0.3
LIG1-204ENST00000542460 RBFAQ8N0V3 343 aa16.92■□□□□ 0.3
LIG1-204ENST00000542460 OR1E3Q8WZA6 343 aa16.92■□□□□ 0.3
LIG1-204ENST00000542460 ELF4Q99607 663 aaPredicted RBP16.92■□□□□ 0.3
LIG1-204ENST00000542460 CDC42EP4Q9H3Q1 356 aaKnown RBP16.92■□□□□ 0.3
LIG1-204ENST00000542460 VPS37BQ9H9H4 285 aa16.92■□□□□ 0.3
LIG1-204ENST00000542460 CYP4F12Q9HCS2 524 aa16.92■□□□□ 0.3
LIG1-204ENST00000542460 MRPL40Q9NQ50 206 aaKnown RBP16.92■□□□□ 0.3
LIG1-204ENST00000542460 IARS2Q9NSE4 1012 aaKnown RBP16.92■□□□□ 0.3
LIG1-204ENST00000542460 DNAJC28Q9NX36 388 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms