RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 ZNF99A8MXY4 864 aaPredicted RBP9.4□□□□□ -0.9
CLIP1-214ENST00000540539 SGK1O00141 431 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 TFECO14948 347 aaPredicted RBP9.4□□□□□ -0.9
CLIP1-214ENST00000540539 ZBTB39O15060 712 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 CLIC2O15247 247 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 TLL1O43897 1013 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 CDK1P06493 297 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 RPS17P08708 135 aaKnown RBP9.4□□□□□ -0.9
CLIP1-214ENST00000540539 ATP6V1B2P21281 511 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 DNAJB1P25685 340 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 GABRB2P47870 512 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 ZNF45Q02386 682 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 LRRC74AQ0VAA2 488 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 PCLAFQ15004 111 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 IMPG1Q17R60 797 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 ZACNQ401N2 412 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 ZNF404Q494X3 552 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 PIK3R6Q5UE93 754 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 DRICH1Q6PGQ1 229 aaPredicted RBP9.4□□□□□ -0.9
CLIP1-214ENST00000540539 GPALPP1Q8IXQ4 340 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 OR8H3Q8N146 312 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 PDIK1LQ8N165 341 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 YIPF7Q8N8F6 280 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 MAGEE2Q8TD90 523 aaPredicted RBP9.4□□□□□ -0.9
CLIP1-214ENST00000540539 FUBP1Q96AE4 644 aaKnown RBP9.4□□□□□ -0.9
CLIP1-214ENST00000540539 DYNLL2Q96FJ2 89 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 FAM167AQ96KS9 214 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 MNTQ99583 582 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 STRA6Q9BX79 667 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 MMP27Q9H306 513 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 WDR55Q9H6Y2 383 aaPredicted RBP9.4□□□□□ -0.9
CLIP1-214ENST00000540539 NIPAL2Q9H841 368 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 PNPLA8Q9NP80 782 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 TLR9Q9NR96 1032 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 TRMT13Q9NUP7 481 aaKnown RBP9.4□□□□□ -0.9
CLIP1-214ENST00000540539 NOCTQ9UK39 431 aaKnown RBP9.4□□□□□ -0.9
CLIP1-214ENST00000540539 EDARQ9UNE0 448 aa9.4□□□□□ -0.9
CLIP1-214ENST00000540539 MRPL11Q9Y3B7 192 aaKnown RBP9.4□□□□□ -0.9
CLIP1-214ENST00000540539 TNPO3Q9Y5L0 923 aaKnown RBP9.4□□□□□ -0.9
CLIP1-214ENST00000540539 NEMP1O14524 444 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 CALUO43852 315 aaPredicted RBP9.39□□□□□ -0.91
CLIP1-214ENST00000540539 SGPL1O95470 568 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 HLA-DOAP06340 250 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 FABP1P07148 127 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 TYK2P29597 1187 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 GPC1P35052 558 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 RFX2P48378 723 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 TNFAIP1Q13829 316 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 CALCRLQ16602 461 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 FUT11Q495W5 492 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 GTDC1Q4AE62 458 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 RBM48Q5RL73 367 aaKnown RBP9.39□□□□□ -0.91
CLIP1-214ENST00000540539 TPRG1LQ5T0D9 272 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 PLA2G4FQ68DD2 849 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 TFAP2EQ6VUC0 442 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 ADGRG3Q86Y34 549 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 PLD3Q8IV08 490 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 C10orf107Q8IVU9 208 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 ZNF781Q8N8C0 355 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 FAM151AQ8WW52 585 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 RPL3LQ92901 407 aaKnown RBP9.39□□□□□ -0.91
CLIP1-214ENST00000540539 TMCO6Q96DC7 493 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 CENPNQ96H22 339 aaPredicted RBP9.39□□□□□ -0.91
CLIP1-214ENST00000540539 NAT9Q9BTE0 207 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 SPATA9Q9BWV2 254 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 GTPBP2Q9BX10 602 aaKnown RBP9.39□□□□□ -0.91
CLIP1-214ENST00000540539 UPF3AQ9H1J1 476 aaKnown RBP9.39□□□□□ -0.91
CLIP1-214ENST00000540539 SPNS1Q9H2V7 528 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 TRIM45Q9H8W5 580 aaPredicted RBP9.39□□□□□ -0.91
CLIP1-214ENST00000540539 CREBZFQ9NS37 354 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 CCM2LQ9NUG4 571 aaPredicted RBP9.39□□□□□ -0.91
CLIP1-214ENST00000540539 KLHL11Q9NVR0 708 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 C14orf119Q9NWQ9 140 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 TMEM181Q9P2C4 612 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 RAB23Q9ULC3 237 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 LRFN2Q9ULH4 789 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 SLC22A7Q9Y694 548 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 ROBO3Q96MS0 1386 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 HMX2A2RU54 273 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 CCDC154A6NI56 674 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 METTL15A6NJ78 407 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 PDXKO00764 312 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 TSC22D2O75157 780 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 MICAL2O94851 1124 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 WDPCPO95876 746 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 CCNYL3P0C7X3 344 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 SLC15A1P46059 708 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 RECQLP46063 649 aaPredicted RBP9.39□□□□□ -0.91
CLIP1-214ENST00000540539 TAS2R40P59535 323 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 CNTN2Q02246 1040 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 PRKCDQ05655 676 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 PTP4A2Q12974 167 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 POU4F3Q15319 338 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 GRIK4Q16099 956 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 SETMARQ53H47 684 aaPredicted RBP9.39□□□□□ -0.91
CLIP1-214ENST00000540539 ZBTB41Q5SVQ8 909 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 MPP7Q5T2T1 576 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 GPRIN3Q6ZVF9 776 aa9.39□□□□□ -0.91
CLIP1-214ENST00000540539 CMTR2Q8IYT2 770 aaKnown RBP9.39□□□□□ -0.91
CLIP1-214ENST00000540539 TMEM199Q8N511 208 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms