RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 C1orf50Q9BV19 199 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 HIPK3Q9H422 1215 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 RGS18Q9NS28 235 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 CMTM6Q9NX76 183 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 DNAJC15Q9Y5T4 150 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 CCDC162PA2VCL2 907 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 DRGXA6NNA5 263 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 AXIN1O15169 862 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 FDXRP22570 491 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 HMOX2P30519 316 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 PSMD8P48556 350 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 TAF10Q12962 218 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 SETMARQ53H47 684 aaPredicted RBP12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 SAMD4BQ5PRF9 694 aaKnown RBP12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 C8orf82Q6P1X6 216 aaPredicted RBP12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 NCCRP1Q6ZVX7 275 aaPredicted RBP12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 ERMP1Q7Z2K6 904 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 TUBGCP3Q96CW5 907 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 ITCHQ96J02 903 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 RNF145Q96MT1 663 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 MUS81Q96NY9 551 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 CCSER2Q9H7U1 834 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 POLE4Q9NR33 117 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 UTP6Q9NYH9 597 aaKnown RBP12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 FNIP2Q9P278 1114 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 TMEM181Q9P2C4 612 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 SARDHQ9UL12 918 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 MED16Q9Y2X0 877 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 PTGES3LE9PB15 166 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 UBXN8O00124 270 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 KCNQ1P51787 676 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 KPNA2P52292 529 aaKnown RBP12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 ARPP19P56211 112 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 STX1BP61266 288 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 ACVR1Q04771 509 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 LAPTM5Q13571 262 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 SQLEQ14534 574 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 FAM26DQ5JW98 314 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 ANKRD26P1Q6NSI1 321 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 GALNT7Q86SF2 657 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 OR10Q1Q8NGQ4 319 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 TRPC4APQ8TEL6 797 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 L3HYPDHQ96EM0 354 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 BTN2A3PQ96KV6 586 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 RPRD1AQ96P16 312 aaPredicted RBP12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 GPR62Q9BZJ7 368 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 EML4Q9HC35 981 aaKnown RBP12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 MID1IP1Q9NPA3 183 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 TRIM17Q9Y577 477 aa12.48□□□□□ -0.41
SFSWAP-208ENST00000539506 FAM92AA1XBS5 289 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 PIP5K1BO14986 540 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 RSL1D1O76021 490 aaKnown RBP12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 CDK14O94921 469 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 FASP25445 335 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 OR1E1P30953 314 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 PRKCZQ05513 592 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 GALNT1Q10472 559 aaPredicted RBP12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 MAPK11Q15759 364 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 PFKFB4Q16877 469 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 MFSD14CQ5VZR4 134 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 CAMK1DQ8IU85 385 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 CCDC126Q96EE4 140 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 CCDC90BQ9GZT6 254 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 TUBB1Q9H4B7 451 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 FBXO44Q9H4M3 255 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 SPC25Q9HBM1 224 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 MARCH2Q9P0N8 246 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 SLC12A8A0AV02 714 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 ANGPT2O15123 496 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 CD3EAPO15446 510 aaKnown RBP12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 RAMP2O60895 175 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 IGLV3-27P01718 113 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 HSPA8P11142 646 aaKnown RBP12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 SLC2A3P11169 496 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 CKBP12277 381 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 MAGP20916 626 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 IL10P22301 178 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 HALP42357 657 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 RGRP47804 291 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 CD97P48960 835 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 HERVK_113P63132 956 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 TRIP4Q15650 581 aaPredicted RBP12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 C10orf120Q5SQS8 335 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 GLB1LQ6UWU2 654 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 SAPCD2Q86UD0 394 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 ITIH5Q86UX2 942 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 SLC7A5P1Q8MH63 180 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 DHRSXQ8N5I4 330 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 FBXO32Q969P5 355 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 TSPAN17Q96FV3 270 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 ZBED2Q9BTP6 218 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 ERVK-6Q9BXR3 956 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 PDFQ9HBH1 243 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 SEMA4BQ9NPR2 832 aaPredicted RBP12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 PRDM8Q9NQV8 689 aa12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.47□□□□□ -0.41
SFSWAP-208ENST00000539506 ARPC2O15144 300 aa12.46□□□□□ -0.41
SFSWAP-208ENST00000539506 NOBOXO60393 691 aa12.46□□□□□ -0.41
SFSWAP-208ENST00000539506 BMP10O95393 424 aa12.46□□□□□ -0.41
SFSWAP-208ENST00000539506 ELNP15502 786 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms