RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 PRIMA1Q86XR5 153 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 EPS8L1Q8TE68 723 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 SHC3Q92529 594 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 NR4A3Q92570 626 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 USP28Q96RU2 1077 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 TBCBQ99426 244 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 DPH2Q9BQC3 489 aaPredicted RBP9.01□□□□□ -0.97
USP28-205ENST00000537706 RAB33BQ9H082 229 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 RMI1Q9H9A7 625 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 SLC24A3Q9HC58 644 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 GDPD2Q9HCC8 539 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 CCM2LQ9NUG4 571 aaPredicted RBP9.01□□□□□ -0.97
USP28-205ENST00000537706 B4GALT6Q9UBX8 382 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 KCNK6Q9Y257 313 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 SLC16A3O15427 465 aaKnown RBP9.01□□□□□ -0.97
USP28-205ENST00000537706 UNC5CO95185 931 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 CRYABP02511 175 aaKnown RBP9.01□□□□□ -0.97
USP28-205ENST00000537706 EBLN1P0CF75 366 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 GM2AP17900 193 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 DNASE1P24855 282 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 FOLR3P41439 243 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 YBEYP58557 167 aaPredicted RBP9.01□□□□□ -0.97
USP28-205ENST00000537706 UBE2IP63279 158 aaKnown RBP9.01□□□□□ -0.97
USP28-205ENST00000537706 NRG1Q02297 640 aaPredicted RBP9.01□□□□□ -0.97
USP28-205ENST00000537706 GCNT1Q02742 428 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 ADCY2Q08462 1091 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 NCF4Q15080 339 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 PLCL1Q15111 1095 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 CYTH1Q15438 398 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 SLC25A52Q3SY17 297 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 NLRP14Q86W24 1093 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 ZSWIM9Q86XI8 627 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 ZNF606Q8WXB4 792 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 SPATA32Q96LK8 384 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 CPXM1Q96SM3 734 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 TNFRSF10DQ9UBN6 386 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 SEC14L3Q9UDX4 400 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 OR12D3Q9UGF7 316 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 ANKRD36A6QL64 1941 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 PKDREJQ9NTG1 2253 aa9□□□□□ -0.97
USP28-205ENST00000537706 UBA6A0AVT1 1052 aaPredicted RBP9□□□□□ -0.97
USP28-205ENST00000537706 I6L893 689 aaPredicted RBP9□□□□□ -0.97
USP28-205ENST00000537706 LDB2O43679 373 aa9□□□□□ -0.97
USP28-205ENST00000537706 GADD45BO75293 160 aaPredicted RBP9□□□□□ -0.97
USP28-205ENST00000537706 HEXIM1O94992 359 aaKnown RBP9□□□□□ -0.97
USP28-205ENST00000537706 ACP5P13686 325 aa9□□□□□ -0.97
USP28-205ENST00000537706 ETV3P41162 512 aa9□□□□□ -0.97
USP28-205ENST00000537706 HSD11B2P80365 405 aa9□□□□□ -0.97
USP28-205ENST00000537706 ADORA2A-AS1P86434 159 aa9□□□□□ -0.97
USP28-205ENST00000537706 DPTQ07507 201 aa9□□□□□ -0.97
USP28-205ENST00000537706 KCNAB1Q14722 419 aa9□□□□□ -0.97
USP28-205ENST00000537706 CNGA3Q16281 694 aa9□□□□□ -0.97
USP28-205ENST00000537706 PLEKHS1Q5SXH7 462 aa9□□□□□ -0.97
USP28-205ENST00000537706 OTUD1Q5VV17 481 aaPredicted RBP9□□□□□ -0.97
USP28-205ENST00000537706 RRAGAQ7L523 313 aa9□□□□□ -0.97
USP28-205ENST00000537706 GRAMD1CQ8IYS0 662 aa9□□□□□ -0.97
USP28-205ENST00000537706 EID3Q8N140 333 aa9□□□□□ -0.97
USP28-205ENST00000537706 NETO2Q8NC67 525 aa9□□□□□ -0.97
USP28-205ENST00000537706 C18orf12Q96KH6 178 aa9□□□□□ -0.97
USP28-205ENST00000537706 ZNF396Q96N95 335 aaPredicted RBP9□□□□□ -0.97
USP28-205ENST00000537706 TSG101Q99816 390 aa9□□□□□ -0.97
USP28-205ENST00000537706 PLCB1Q9NQ66 1216 aa9□□□□□ -0.97
USP28-205ENST00000537706 POT1Q9NUX5 634 aa9□□□□□ -0.97
USP28-205ENST00000537706 NDFIP2Q9NV92 336 aa9□□□□□ -0.97
USP28-205ENST00000537706 VPS18Q9P253 973 aa9□□□□□ -0.97
USP28-205ENST00000537706 SYCE3A1L190 88 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 HEXAP06865 529 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 HBQ1P09105 142 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 ADRA1BP35368 520 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 TDGF1P3P51864 188 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 CEBPEQ15744 281 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 PARP15Q460N3 678 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 CCDC183Q5T5S1 534 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 FAM173BQ6P4H8 233 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 FAM198BQ6UWH4 519 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 TECPR1Q7Z6L1 1165 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 FAM131BQ86XD5 332 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 SYTL1Q8IYJ3 562 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 LINC00301Q8NCQ3 95 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 OR1N1Q8NGS0 311 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 KAT5Q92993 513 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 ECHDC3Q96DC8 303 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 VPS50Q96JG6 964 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 MAGED4Q96JG8 741 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 PLEKHG4BQ96PX9 1271 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 CD180Q99467 661 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 GTPBP4Q9BZE4 634 aaKnown RBP8.99□□□□□ -0.97
USP28-205ENST00000537706 SCAND2PQ9GZW5 306 aaPredicted RBP8.99□□□□□ -0.97
USP28-205ENST00000537706 OSGEPL1Q9H4B0 414 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 ZBTB20Q9HC78 741 aaPredicted RBP8.99□□□□□ -0.97
USP28-205ENST00000537706 P4HTMQ9NXG6 502 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 SEMA5BQ9P283 1151 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 ARMCX3Q9UH62 379 aaPredicted RBP8.99□□□□□ -0.97
USP28-205ENST00000537706 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.99□□□□□ -0.97
USP28-205ENST00000537706 MAP3K7O43318 606 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 ZWINTO95229 277 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 INHBBP09529 407 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 MYBL2P10244 700 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 CYP2A7P20853 494 aa8.99□□□□□ -0.97
USP28-205ENST00000537706 SHC4Q6S5L8 630 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms