RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 KDM1BQ8NB78 822 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 TET1Q8NFU7 2136 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 BICD2Q8TD16 824 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 AFAP1L1Q8TED9 768 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 ATP8B4Q8TF62 1192 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 RFFLQ8WZ73 363 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 ZUFSPQ96AP4 578 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 ZBTB10Q96DT7 871 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 TM6SF1Q9BZW5 370 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 ACAD9Q9H845 621 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 TBC1D17Q9HA65 648 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 PREBQ9HCU5 417 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 TXLNGQ9NUQ3 528 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 BAG5Q9UL15 447 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 ARHGAP26Q9UNA1 814 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 PCDHA10Q9Y5I2 948 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 MYO10Q9HD67 2058 aa4.02□□□□□ -1.77
CD44-235ENST00000532339 ACACAQ13085 2346 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 PCNX1Q96RV3 2341 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 TANC1Q9C0D5 1861 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 ABCA2Q9BZC7 2435 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 TRBV5-7A0A0A0MS05 114 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 WDR46O15213 610 aaKnown RBP4.01□□□□□ -1.77
CD44-235ENST00000532339 HNRNPRO43390 633 aaKnown RBP4.01□□□□□ -1.77
CD44-235ENST00000532339 FRAT2O75474 233 aaPredicted RBP4.01□□□□□ -1.77
CD44-235ENST00000532339 RNASEH2AO75792 299 aaKnown RBP4.01□□□□□ -1.77
CD44-235ENST00000532339 SNAI1O95863 264 aaPredicted RBP4.01□□□□□ -1.77
CD44-235ENST00000532339 ACP5P13686 325 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 CHN1P15882 459 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 CHRNB2P17787 502 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 TNFSF8P32971 234 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 PSMC2P35998 433 aaKnown RBP4.01□□□□□ -1.77
CD44-235ENST00000532339 CSRP3P50461 194 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 GAS1P54826 345 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 CASP6P55212 293 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 DCAF7P61962 342 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 PSMC6P62333 389 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 GALNT2Q10471 571 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 ACVR2BQ13705 512 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 SHBQ15464 509 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 WDR45BQ5MNZ6 344 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 VWA5B1Q5TIE3 1220 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 KIAA1324Q6UXG2 1013 aaKnown RBP4.01□□□□□ -1.77
CD44-235ENST00000532339 TMEM184AQ6ZMB5 413 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.01□□□□□ -1.77
CD44-235ENST00000532339 ADGRD2Q7Z7M1 963 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 TMEM200AQ86VY9 491 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 MYOCDQ8IZQ8 938 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 ENDOVQ8N8Q3 282 aaKnown RBP4.01□□□□□ -1.77
CD44-235ENST00000532339 CLEC4CQ8WTT0 213 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 ARRDC3Q96B67 414 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 LMLNQ96KR4 655 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 PIGSQ96S52 555 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 B3GNT4Q9C0J1 378 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 CDT1Q9H211 546 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 C6orf106Q9H6K1 298 aaPredicted RBP4.01□□□□□ -1.77
CD44-235ENST00000532339 ACTR5Q9H9F9 607 aaPredicted RBP4.01□□□□□ -1.77
CD44-235ENST00000532339 GPR108Q9NPR9 543 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 ARL15Q9NXU5 204 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 PKP3Q9Y446 797 aa4.01□□□□□ -1.77
CD44-235ENST00000532339 MROH7-TTC4A0A0A0MT08 1334 aa4□□□□□ -1.77
CD44-235ENST00000532339 DOPEY2Q9Y3R5 2298 aa4□□□□□ -1.77
CD44-235ENST00000532339 ATG2AQ2TAZ0 1938 aa4□□□□□ -1.77
CD44-235ENST00000532339 TICRRQ7Z2Z1 1910 aa4□□□□□ -1.77
CD44-235ENST00000532339 A0A087X0M5 115 aa4□□□□□ -1.77
CD44-235ENST00000532339 A0A1B0GX30 115 aa4□□□□□ -1.77
CD44-235ENST00000532339 CLEC18AA5D8T8 446 aa4□□□□□ -1.77
CD44-235ENST00000532339 F5H0A9 414 aaPredicted RBP4□□□□□ -1.77
CD44-235ENST00000532339 MS4A18H0YCH9 400 aa4□□□□□ -1.77
CD44-235ENST00000532339 CSPG5O95196 566 aa4□□□□□ -1.77
CD44-235ENST00000532339 DDX58O95786 925 aaKnown RBP4□□□□□ -1.77
CD44-235ENST00000532339 GLUD1P00367 558 aa4□□□□□ -1.77
CD44-235ENST00000532339 PGK2P07205 417 aa4□□□□□ -1.77
CD44-235ENST00000532339 PRSS2P07478 247 aa4□□□□□ -1.77
CD44-235ENST00000532339 CEACAM1P13688 526 aa4□□□□□ -1.77
CD44-235ENST00000532339 PKMP14618 531 aaKnown RBP4□□□□□ -1.77
CD44-235ENST00000532339 GLULP15104 373 aa4□□□□□ -1.77
CD44-235ENST00000532339 HOXB8P17481 243 aaPredicted RBP4□□□□□ -1.77
CD44-235ENST00000532339 KLRC2P26717 231 aa4□□□□□ -1.77
CD44-235ENST00000532339 ABCD3P28288 659 aa4□□□□□ -1.77
CD44-235ENST00000532339 GLUD2P49448 558 aa4□□□□□ -1.77
CD44-235ENST00000532339 ART1P52961 327 aa4□□□□□ -1.77
CD44-235ENST00000532339 RCAN1P53805 252 aa4□□□□□ -1.77
CD44-235ENST00000532339 OAZ1P54368 228 aa4□□□□□ -1.77
CD44-235ENST00000532339 ABATP80404 500 aa4□□□□□ -1.77
CD44-235ENST00000532339 RPL36AP83881 106 aaKnown RBP4□□□□□ -1.77
CD44-235ENST00000532339 TRAF1Q13077 416 aa4□□□□□ -1.77
CD44-235ENST00000532339 THOC5Q13769 683 aaKnown RBP4□□□□□ -1.77
CD44-235ENST00000532339 LPAL2Q16609 132 aa4□□□□□ -1.77
CD44-235ENST00000532339 BAK1Q16611 211 aa4□□□□□ -1.77
CD44-235ENST00000532339 DUSP6Q16828 381 aa4□□□□□ -1.77
CD44-235ENST00000532339 TCTN1Q2MV58 587 aa4□□□□□ -1.77
CD44-235ENST00000532339 CBWD5Q5RIA9 395 aa4□□□□□ -1.77
CD44-235ENST00000532339 ACAD10Q6JQN1 1059 aa4□□□□□ -1.77
CD44-235ENST00000532339 ANKRD54Q6NXT1 300 aa4□□□□□ -1.77
CD44-235ENST00000532339 SLC30A9Q6PML9 568 aa4□□□□□ -1.77
CD44-235ENST00000532339 FAM83HQ6ZRV2 1179 aaPredicted RBP4□□□□□ -1.77
CD44-235ENST00000532339 CLEC18CQ8NCF0 446 aa4□□□□□ -1.77
CD44-235ENST00000532339 FAM110DQ8TAY7 271 aaPredicted RBP4□□□□□ -1.77
CD44-235ENST00000532339 STAMQ92783 540 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms