RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 CCHCR1Q8TD31 782 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 FGF11Q92914 225 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 PMEPA1Q969W9 287 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 LIN37Q96GY3 246 aaPredicted RBP10.53□□□□□ -0.72
CD44-227ENST00000528086 PLEKHG4BQ96PX9 1271 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 VPS35Q96QK1 796 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 GFM1Q96RP9 751 aaKnown RBP10.53□□□□□ -0.72
CD44-227ENST00000528086 ZSCAN5AQ9BUG6 496 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 SPATA16Q9BXB7 569 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 CARD9Q9H257 536 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 PRDM8Q9NQV8 689 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 HAUS2Q9NVX0 235 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 ZNF624Q9P2J8 865 aaPredicted RBP10.53□□□□□ -0.72
CD44-227ENST00000528086 ZNHIT2Q9UHR6 403 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 PCDHGA8Q9Y5G5 932 aa10.53□□□□□ -0.72
CD44-227ENST00000528086 IGHV1OR21-1A0A087WYE8 117 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 AGRPO00253 132 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 CCL22O00626 93 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 LDB2O43679 373 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 TJP3O95049 919 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 SLC25A14O95258 325 aaPredicted RBP10.52□□□□□ -0.73
CD44-227ENST00000528086 IPO7O95373 1038 aaKnown RBP10.52□□□□□ -0.73
CD44-227ENST00000528086 ETS1P14921 441 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 HLA-DPA1P20036 260 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 FASLGP48023 281 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 CLCNKAP51800 687 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 TLE3Q04726 772 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 SQSTM1Q13501 440 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 PEX6Q13608 980 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 ZNF569Q5MCW4 686 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 MEI1Q5TIA1 1274 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 CRTC3Q6UUV7 619 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 FAM151BQ6UXP7 276 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 FAM83HQ6ZRV2 1179 aaPredicted RBP10.52□□□□□ -0.73
CD44-227ENST00000528086 ZNF662Q6ZS27 426 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 CLEC14AQ86T13 490 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 CDKL3Q8IVW4 592 aaPredicted RBP10.52□□□□□ -0.73
CD44-227ENST00000528086 LRRC8AQ8IWT6 810 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 SPACA3Q8IXA5 215 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 RNF10Q8N5U6 811 aaKnown RBP10.52□□□□□ -0.73
CD44-227ENST00000528086 RASGEF1AQ8N9B8 481 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 OR6C4Q8NGE1 309 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 OR13C4Q8NGS5 318 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 DTX3LQ8TDB6 740 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 BLOC1S5Q8TDH9 187 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 RTP4Q96DX8 246 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 DCBLD2Q96PD2 775 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 TMEM121Q9BTD3 319 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 CDH19Q9H159 772 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 SYNDIG1Q9H7V2 258 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 ARNT2Q9HBZ2 717 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 EVA1BQ9NVM1 165 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 GUCA1BQ9UMX6 200 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 LHX6Q9UPM6 363 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 WDR37Q9Y2I8 494 aa10.52□□□□□ -0.73
CD44-227ENST00000528086 CCDC187A0A096LP49 1063 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 IGHV5-10-1A0A0J9YXX1 117 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 AGAP14A8MT82 685 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 MIF4GDA9UHW6 222 aaKnown RBP10.51□□□□□ -0.73
CD44-227ENST00000528086 EFSO43281 561 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 PRSS56P0CW18 603 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 ITIH1P19827 911 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 MPSTP25325 297 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 ALDH4A1P30038 563 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 SLC19A1P41440 591 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 CDKN1CP49918 316 aaPredicted RBP10.51□□□□□ -0.73
CD44-227ENST00000528086 ZNF140P52738 457 aaPredicted RBP10.51□□□□□ -0.73
CD44-227ENST00000528086 GEMP55040 296 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 INHBCP55103 352 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 UBE2IP63279 158 aaKnown RBP10.51□□□□□ -0.73
CD44-227ENST00000528086 CCDC173Q0VFZ6 552 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 SRSF6Q13247 344 aaKnown RBP10.51□□□□□ -0.73
CD44-227ENST00000528086 LRP8Q14114 963 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 PLA2G4EQ3MJ16 856 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 PDPK2PQ6A1A2 396 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 PCSK4Q6UW60 755 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 PDZD3Q86UT5 571 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 SLC13A5Q86YT5 568 aaPredicted RBP10.51□□□□□ -0.73
CD44-227ENST00000528086 OR4K2Q8NGD2 314 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 WDR48Q8TAF3 677 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 C1orf54Q8WWF1 131 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 GRAMD1AQ96CP6 724 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 NAF1Q96HR8 494 aaKnown RBP10.51□□□□□ -0.73
CD44-227ENST00000528086 ZNF578Q96N58 590 aaPredicted RBP10.51□□□□□ -0.73
CD44-227ENST00000528086 TLR10Q9BXR5 811 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 TRABDQ9H4I3 376 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 PRORYQ9H606 182 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 RMI1Q9H9A7 625 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 PIH1D1Q9NWS0 290 aaKnown RBP10.51□□□□□ -0.73
CD44-227ENST00000528086 OGFRQ9NZT2 677 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 PDP2Q9P2J9 529 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 FKBPLQ9UIM3 349 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 SLC30A1Q9Y6M5 507 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 ATRXP46100 2492 aa10.51□□□□□ -0.73
CD44-227ENST00000528086 C9orf172C9J069 976 aa10.5□□□□□ -0.73
CD44-227ENST00000528086 ARHGAP6O43182 974 aa10.5□□□□□ -0.73
CD44-227ENST00000528086 LIASO43766 372 aa10.5□□□□□ -0.73
CD44-227ENST00000528086 TNFSF15O95150 251 aa10.5□□□□□ -0.73
CD44-227ENST00000528086 CCL4P13236 92 aa10.5□□□□□ -0.73
CD44-227ENST00000528086 F3P13726 295 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms