RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 SETMARQ53H47 684 aaPredicted RBP20.82■□□□□ 0.92
VPS28-208ENST00000527797 GPRC6AQ5T6X5 926 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 LRRC8EQ6NSJ5 796 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 KLC3Q6P597 504 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 RGS9BPQ6ZS82 235 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 NUDCD3Q8IVD9 361 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 TRIM42Q8IWZ5 723 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 SPATA6LQ8N4H0 392 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 HEXDCQ8WVB3 486 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 ANKRD49Q8WVL7 239 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 ZNF75CPQ92670 426 aaPredicted RBP20.82■□□□□ 0.92
VPS28-208ENST00000527797 GPR78Q96P69 363 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 MANSC1Q9H8J5 431 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 CD248Q9HCU0 757 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 FBXL12Q9NXK8 326 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 ZKSCAN7Q9P0L1 754 aaPredicted RBP20.82■□□□□ 0.92
VPS28-208ENST00000527797 SERGEFQ9UGK8 458 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 TRMT6Q9UJA5 497 aaKnown RBP20.82■□□□□ 0.92
VPS28-208ENST00000527797 TMPRSS11EQ9UL52 423 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 CA14Q9ULX7 337 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 MMP17Q9ULZ9 603 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 SORCS3Q9UPU3 1222 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 OAS3Q9Y6K5 1087 aaKnown RBP20.82■□□□□ 0.92
VPS28-208ENST00000527797 IGLV3-16A0A075B6K0 115 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 CPA3P15088 417 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 ZNF37AP17032 561 aaPredicted RBP20.82■□□□□ 0.92
VPS28-208ENST00000527797 GLRBP48167 497 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 TAS2R38P59533 333 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 ZBTB16Q05516 673 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 MACC1Q6ZN28 852 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 FSTL5Q8N475 847 aaPredicted RBP20.82■□□□□ 0.92
VPS28-208ENST00000527797 CCDC97Q96F63 343 aaPredicted RBP20.82■□□□□ 0.92
VPS28-208ENST00000527797 DCUN1D1Q96GG9 259 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 VPS35Q96QK1 796 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 COPG2Q9UBF2 871 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 PRSS21Q9Y6M0 314 aa20.82■□□□□ 0.92
VPS28-208ENST00000527797 FADS2P1A8MWK0 482 aa20.81■□□□□ 0.92
VPS28-208ENST00000527797 CFAP99D6REC4 459 aa20.81■□□□□ 0.92
VPS28-208ENST00000527797 PCDH8O95206 1070 aa20.81■□□□□ 0.92
VPS28-208ENST00000527797 ZP2Q05996 745 aa20.81■□□□□ 0.92
VPS28-208ENST00000527797 CKAP5Q14008 2032 aa20.81■□□□□ 0.92
VPS28-208ENST00000527797 ACAP2Q15057 778 aa20.81■□□□□ 0.92
VPS28-208ENST00000527797 TTC31Q49AM3 519 aaPredicted RBP20.81■□□□□ 0.92
VPS28-208ENST00000527797 PAQR3Q6TCH7 311 aa20.81■□□□□ 0.92
VPS28-208ENST00000527797 LRRC34Q8IZ02 419 aa20.81■□□□□ 0.92
VPS28-208ENST00000527797 CLDN19Q8N6F1 224 aa20.81■□□□□ 0.92
VPS28-208ENST00000527797 RDH11Q8TC12 318 aa20.81■□□□□ 0.92
VPS28-208ENST00000527797 BTN2A2Q8WVV5 523 aa20.81■□□□□ 0.92
VPS28-208ENST00000527797 SIPA1Q96FS4 1042 aa20.81■□□□□ 0.92
VPS28-208ENST00000527797 MECRQ9BV79 373 aa20.81■□□□□ 0.92
VPS28-208ENST00000527797 SLC6A17Q9H1V8 727 aa20.81■□□□□ 0.92
VPS28-208ENST00000527797 RABEP2Q9H5N1 569 aa20.81■□□□□ 0.92
VPS28-208ENST00000527797 ARHGEF3Q9NR81 526 aa20.81■□□□□ 0.92
VPS28-208ENST00000527797 KCTD5Q9NXV2 234 aa20.81■□□□□ 0.92
VPS28-208ENST00000527797 IQCF5A8MTL0 148 aa20.8■□□□□ 0.92
VPS28-208ENST00000527797 RBP1P09455 135 aa20.8■□□□□ 0.92
VPS28-208ENST00000527797 RALBP11234 206 aa20.8■□□□□ 0.92
VPS28-208ENST00000527797 BGNP21810 368 aa20.8■□□□□ 0.92
VPS28-208ENST00000527797 ALDH3A1P30838 453 aa20.8■□□□□ 0.92
VPS28-208ENST00000527797 AKT1P31749 480 aa20.8■□□□□ 0.92
VPS28-208ENST00000527797 DPTQ07507 201 aa20.8■□□□□ 0.92
VPS28-208ENST00000527797 SFSWAPQ12872 951 aaKnown RBP20.8■□□□□ 0.92
VPS28-208ENST00000527797 LDLRAP1Q5SW96 308 aa20.8■□□□□ 0.92
VPS28-208ENST00000527797 CPLX4Q7Z7G2 160 aa20.8■□□□□ 0.92
VPS28-208ENST00000527797 NLRP8Q86W28 1048 aa20.8■□□□□ 0.92
VPS28-208ENST00000527797 NKAPQ8N5F7 415 aaKnown RBP20.8■□□□□ 0.92
VPS28-208ENST00000527797 SIDT2Q8NBJ9 832 aaKnown RBP20.8■□□□□ 0.92
VPS28-208ENST00000527797 DDHD1Q8NEL9 900 aa20.8■□□□□ 0.92
VPS28-208ENST00000527797 BCAS4Q8TDM0 211 aa20.8■□□□□ 0.92
VPS28-208ENST00000527797 FAM131CQ96AQ9 280 aa20.8■□□□□ 0.92
VPS28-208ENST00000527797 MRPL57Q9BQC6 102 aaKnown RBP20.8■□□□□ 0.92
VPS28-208ENST00000527797 UNKQ9C0B0 810 aaKnown RBP20.8■□□□□ 0.92
VPS28-208ENST00000527797 FAM107BQ9H098 131 aa20.8■□□□□ 0.92
VPS28-208ENST00000527797 MRPL46Q9H2W6 279 aaKnown RBP20.8■□□□□ 0.92
VPS28-208ENST00000527797 SARS2Q9NP81 518 aaKnown RBP20.8■□□□□ 0.92
VPS28-208ENST00000527797 SIRPGQ9P1W8 387 aa20.8■□□□□ 0.92
VPS28-208ENST00000527797 CPSF2Q9P2I0 782 aaKnown RBP20.8■□□□□ 0.92
VPS28-208ENST00000527797 GALPQ9UBC7 116 aa20.8■□□□□ 0.92
VPS28-208ENST00000527797 WNT16Q9UBV4 365 aa20.8■□□□□ 0.92
VPS28-208ENST00000527797 NCKAP1Q9Y2A7 1128 aa20.8■□□□□ 0.92
VPS28-208ENST00000527797 MRPS17Q9Y2R5 130 aaKnown RBP20.8■□□□□ 0.92
VPS28-208ENST00000527797 TM7SF2O76062 418 aa20.79■□□□□ 0.92
VPS28-208ENST00000527797 ATP1B2P14415 290 aaPredicted RBP20.79■□□□□ 0.92
VPS28-208ENST00000527797 MSH3P20585 1137 aa20.79■□□□□ 0.92
VPS28-208ENST00000527797 B4GALNT1Q00973 533 aa20.79■□□□□ 0.92
VPS28-208ENST00000527797 PCLAFQ15004 111 aa20.79■□□□□ 0.92
VPS28-208ENST00000527797 TMEM92Q6UXU6 159 aa20.79■□□□□ 0.92
VPS28-208ENST00000527797 SPNS2Q8IVW8 549 aa20.79■□□□□ 0.92
VPS28-208ENST00000527797 TMEM151AQ8N4L1 468 aa20.79■□□□□ 0.92
VPS28-208ENST00000527797 CD200R1Q8TD46 325 aa20.79■□□□□ 0.92
VPS28-208ENST00000527797 GLYATL1Q969I3 302 aa20.79■□□□□ 0.92
VPS28-208ENST00000527797 CCT8L2Q96SF2 557 aa20.79■□□□□ 0.92
VPS28-208ENST00000527797 XPR1Q9UBH6 696 aa20.79■□□□□ 0.92
VPS28-208ENST00000527797 DHRS7Q9Y394 339 aa20.79■□□□□ 0.92
VPS28-208ENST00000527797 MTF2Q9Y483 593 aaPredicted RBP20.79■□□□□ 0.92
VPS28-208ENST00000527797 XIRP2A4UGR9 3374 aa20.79■□□□□ 0.92
VPS28-208ENST00000527797 IGLON5A6NGN9 336 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 SLC25A14O95258 325 aaPredicted RBP20.78■□□□□ 0.92
VPS28-208ENST00000527797 TRIM16O95361 564 aa20.78■□□□□ 0.92
VPS28-208ENST00000527797 FAM107AO95990 144 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms