RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 TAF1AQ15573 450 aaPredicted RBP20.37■□□□□ 0.85
VPS28-206ENST00000526734 P3H1Q32P28 736 aa20.37■□□□□ 0.85
VPS28-206ENST00000526734 LDLRAP1Q5SW96 308 aa20.37■□□□□ 0.85
VPS28-206ENST00000526734 ARHGEF18Q6ZSZ5 1173 aa20.37■□□□□ 0.85
VPS28-206ENST00000526734 RAB11FIP2Q7L804 512 aa20.37■□□□□ 0.85
VPS28-206ENST00000526734 B3GNT8Q7Z7M8 397 aa20.37■□□□□ 0.85
VPS28-206ENST00000526734 CLEC14AQ86T13 490 aa20.37■□□□□ 0.85
VPS28-206ENST00000526734 SLC35B2Q8TB61 432 aa20.37■□□□□ 0.85
VPS28-206ENST00000526734 CCDC110Q8TBZ0 833 aa20.37■□□□□ 0.85
VPS28-206ENST00000526734 SLC37A2Q8TED4 501 aa20.37■□□□□ 0.85
VPS28-206ENST00000526734 PATE1Q8WXA2 126 aa20.37■□□□□ 0.85
VPS28-206ENST00000526734 ALS2CR12Q96Q35 445 aa20.37■□□□□ 0.85
VPS28-206ENST00000526734 FAM118BQ9BPY3 351 aa20.37■□□□□ 0.85
VPS28-206ENST00000526734 BPIFA1Q9NP55 256 aa20.37■□□□□ 0.85
VPS28-206ENST00000526734 SARS2Q9NP81 518 aaKnown RBP20.37■□□□□ 0.85
VPS28-206ENST00000526734 SMOXQ9NWM0 555 aa20.37■□□□□ 0.85
VPS28-206ENST00000526734 AKAP7Q9P0M2 348 aaPredicted RBP20.37■□□□□ 0.85
VPS28-206ENST00000526734 GUCA1BQ9UMX6 200 aa20.37■□□□□ 0.85
VPS28-206ENST00000526734 KCNK6Q9Y257 313 aa20.37■□□□□ 0.85
VPS28-206ENST00000526734 ZZEF1O43149 2961 aa20.37■□□□□ 0.85
VPS28-206ENST00000526734 A6NCN8 305 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 B4GAT1O43505 415 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 KCNJ13O60928 360 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 CDK14O94921 469 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 CRTAMO95727 393 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 AGTP01019 485 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 CCDC175P0C221 793 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 F3P13726 295 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 VCLP18206 1134 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 LPOP22079 712 aaPredicted RBP20.36■□□□□ 0.85
VPS28-206ENST00000526734 ALDH4A1P30038 563 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 TRA2AQ13595 282 aaKnown RBP eCLIP20.36■□□□□ 0.85
VPS28-206ENST00000526734 PARP6Q2NL67 630 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 COL28A1Q2UY09 1125 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 ATP13A5Q4VNC0 1218 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 CHCHD2P9Q5T1J5 151 aaPredicted RBP20.36■□□□□ 0.85
VPS28-206ENST00000526734 IYDQ6PHW0 289 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 SLC9B2Q86UD5 537 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 SLITRK4Q8IW52 837 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 FBXO39Q8N4B4 442 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 GDAP1Q8TB36 358 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 HNRNPLLQ8WVV9 542 aaKnown RBP20.36■□□□□ 0.85
VPS28-206ENST00000526734 PRR11Q96HE9 360 aaPredicted RBP20.36■□□□□ 0.85
VPS28-206ENST00000526734 TTC25Q96NG3 672 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 CMKLR1Q99788 373 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 LDHAL6BQ9BYZ2 381 aaPredicted RBP20.36■□□□□ 0.85
VPS28-206ENST00000526734 ARNT2Q9HBZ2 717 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 KCNK4Q9NYG8 393 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 TBC1D29Q9UFV1 150 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 PRKAB1Q9Y478 270 aa20.36■□□□□ 0.85
VPS28-206ENST00000526734 A0A1W2PNU3 283 aaPredicted RBP20.35■□□□□ 0.85
VPS28-206ENST00000526734 CDRT15L2A8MXV6 281 aa20.35■□□□□ 0.85
VPS28-206ENST00000526734 PPM1DO15297 605 aa20.35■□□□□ 0.85
VPS28-206ENST00000526734 PSMD3O43242 534 aa20.35■□□□□ 0.85
VPS28-206ENST00000526734 OR1D5P58170 312 aa20.35■□□□□ 0.85
VPS28-206ENST00000526734 HHEXQ03014 270 aa20.35■□□□□ 0.85
VPS28-206ENST00000526734 INSCQ1MX18 579 aa20.35■□□□□ 0.85
VPS28-206ENST00000526734 C19orf48Q6RUI8 117 aa20.35■□□□□ 0.85
VPS28-206ENST00000526734 DDHD1Q8NEL9 900 aa20.35■□□□□ 0.85
VPS28-206ENST00000526734 TBL1YQ9BQ87 522 aa20.35■□□□□ 0.85
VPS28-206ENST00000526734 DPH1Q9BZG8 443 aa20.35■□□□□ 0.85
VPS28-206ENST00000526734 FOXP3Q9BZS1 431 aa20.35■□□□□ 0.85
VPS28-206ENST00000526734 EPB41L1Q9H4G0 881 aa20.35■□□□□ 0.85
VPS28-206ENST00000526734 ATXN7L1Q9ULK2 861 aaPredicted RBP20.35■□□□□ 0.85
VPS28-206ENST00000526734 PCDHGA7Q9Y5G6 932 aa20.35■□□□□ 0.85
VPS28-206ENST00000526734 PCYT1BQ9Y5K3 369 aaPredicted RBP20.35■□□□□ 0.85
VPS28-206ENST00000526734 FAM208BQ5VWN6 2430 aa20.35■□□□□ 0.85
VPS28-206ENST00000526734 ARHGEF17Q96PE2 2063 aaPredicted RBP20.34■□□□□ 0.85
VPS28-206ENST00000526734 IGHV1OR21-1A0A087WYE8 117 aa20.34■□□□□ 0.85
VPS28-206ENST00000526734 HGSO14964 777 aaPredicted RBP20.34■□□□□ 0.85
VPS28-206ENST00000526734 CASC3O15234 703 aaKnown RBP20.34■□□□□ 0.85
VPS28-206ENST00000526734 TNFSF15O95150 251 aa20.34■□□□□ 0.85
VPS28-206ENST00000526734 JMJD7P0C870 316 aa20.34■□□□□ 0.85
VPS28-206ENST00000526734 ZNF7P17097 686 aaPredicted RBP20.34■□□□□ 0.85
VPS28-206ENST00000526734 STIP1P31948 543 aaKnown RBP20.34■□□□□ 0.85
VPS28-206ENST00000526734 UGT1A5P35504 534 aa20.34■□□□□ 0.85
VPS28-206ENST00000526734 EPHA4P54764 986 aa20.34■□□□□ 0.85
VPS28-206ENST00000526734 UCNP55089 124 aa20.34■□□□□ 0.85
VPS28-206ENST00000526734 TMEM115Q12893 351 aaPredicted RBP20.34■□□□□ 0.85
VPS28-206ENST00000526734 AMZ1Q400G9 498 aa20.34■□□□□ 0.85
VPS28-206ENST00000526734 CRTC3Q6UUV7 619 aa20.34■□□□□ 0.85
VPS28-206ENST00000526734 OR4D9Q8NGE8 314 aa20.34■□□□□ 0.85
VPS28-206ENST00000526734 OR10G6Q8NH81 332 aa20.34■□□□□ 0.85
VPS28-206ENST00000526734 RTP4Q96DX8 246 aa20.34■□□□□ 0.85
VPS28-206ENST00000526734 SLC38A3Q99624 504 aa20.34■□□□□ 0.85
VPS28-206ENST00000526734 B3GNT4Q9C0J1 378 aa20.34■□□□□ 0.85
VPS28-206ENST00000526734 LRRC40Q9H9A6 602 aa20.34■□□□□ 0.85
VPS28-206ENST00000526734 ARFGAP3Q9NP61 516 aa20.34■□□□□ 0.85
VPS28-206ENST00000526734 KLC4Q9NSK0 619 aa20.34■□□□□ 0.85
VPS28-206ENST00000526734 TMPRSS11EQ9UL52 423 aa20.34■□□□□ 0.85
VPS28-206ENST00000526734 LOXL2Q9Y4K0 774 aa20.34■□□□□ 0.85
VPS28-206ENST00000526734 KLHL33A6NCF5 533 aa20.33■□□□□ 0.85
VPS28-206ENST00000526734 DUX1O43812 170 aa20.33■□□□□ 0.85
VPS28-206ENST00000526734 CD1CP29017 333 aa20.33■□□□□ 0.85
VPS28-206ENST00000526734 HADHAP40939 763 aa20.33■□□□□ 0.85
VPS28-206ENST00000526734 RPS6KA1Q15418 735 aa20.33■□□□□ 0.85
VPS28-206ENST00000526734 CHRNA6Q15825 494 aa20.33■□□□□ 0.85
VPS28-206ENST00000526734 PHF19Q5T6S3 580 aa20.33■□□□□ 0.85
VPS28-206ENST00000526734 BROXQ5VW32 411 aa20.33■□□□□ 0.85
VPS28-206ENST00000526734 FOXR1Q6PIV2 292 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms