RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 DIO3P55073 304 aa21.06■□□□□ 0.96
VPS28-205ENST00000526204 KRT80Q6KB66 452 aa21.06■□□□□ 0.96
VPS28-205ENST00000526204 ISLR2Q6UXK2 745 aa21.06■□□□□ 0.96
VPS28-205ENST00000526204 B3GNT6Q6ZMB0 384 aa21.06■□□□□ 0.96
VPS28-205ENST00000526204 CAMK1DQ8IU85 385 aa21.06■□□□□ 0.96
VPS28-205ENST00000526204 SPPL2CQ8IUH8 684 aa21.06■□□□□ 0.96
VPS28-205ENST00000526204 PIANPQ8IYJ0 282 aa21.06■□□□□ 0.96
VPS28-205ENST00000526204 TSPAN14Q8NG11 270 aa21.06■□□□□ 0.96
VPS28-205ENST00000526204 TMEM175Q9BSA9 504 aa21.06■□□□□ 0.96
VPS28-205ENST00000526204 BRINP2Q9C0B6 783 aa21.06■□□□□ 0.96
VPS28-205ENST00000526204 CWH43Q9H720 699 aa21.06■□□□□ 0.96
VPS28-205ENST00000526204 RIC8BQ9NVN3 520 aa21.06■□□□□ 0.96
VPS28-205ENST00000526204 LRFN2Q9ULH4 789 aa21.06■□□□□ 0.96
VPS28-205ENST00000526204 PCDHGC4Q9Y5F7 938 aa21.06■□□□□ 0.96
VPS28-205ENST00000526204 ANKRD36A6QL64 1941 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 ZNF840PA6NDX5 716 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 H7C0S8 307 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 STX7O15400 261 aaKnown RBP21.05■□□□□ 0.96
VPS28-205ENST00000526204 CDKN1CP49918 316 aaPredicted RBP21.05■□□□□ 0.96
VPS28-205ENST00000526204 ECT2LQ008S8 904 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 CAPRIN1Q14444 709 aaKnown RBP21.05■□□□□ 0.96
VPS28-205ENST00000526204 RBBP7Q16576 425 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 PSAPL1Q6NUJ1 521 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 UGT3A1Q6NUS8 523 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 MYO1HQ8N1T3 1032 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 RNF186Q9NXI6 227 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 GMPR2Q9P2T1 348 aaKnown RBP21.05■□□□□ 0.96
VPS28-205ENST00000526204 GALPQ9UBC7 116 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 FKBPLQ9UIM3 349 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 THSD7BQ9C0I4 1608 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 NCF1BA6NI72 391 aaPredicted RBP21.05■□□□□ 0.96
VPS28-205ENST00000526204 NCF1CA8MVU1 366 aaPredicted RBP21.05■□□□□ 0.96
VPS28-205ENST00000526204 HOXA2O43364 376 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 EEDO75530 441 aaKnown RBP21.05■□□□□ 0.96
VPS28-205ENST00000526204 SLC22A3O75751 556 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 GJB5O95377 273 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 GPIP06744 558 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 GALTP07902 379 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 NCF1P14598 390 aaPredicted RBP21.05■□□□□ 0.96
VPS28-205ENST00000526204 PTGER3P43115 390 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 NFYCQ13952 458 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 MYLK3Q32MK0 819 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 PDCD4Q53EL6 469 aaKnown RBP21.05■□□□□ 0.96
VPS28-205ENST00000526204 ZRANB3Q5FWF4 1079 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 NHSL2Q5HYW2 709 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 GPRIN3Q6ZVF9 776 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 MFSD2AQ8NA29 543 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 SIDT2Q8NBJ9 832 aaKnown RBP21.05■□□□□ 0.96
VPS28-205ENST00000526204 FBXO22Q8NEZ5 403 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 CD200R1Q8TD46 325 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 EEF1AKMT1Q8WVE0 214 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 ZIC5Q96T25 663 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 SLC30A3Q99726 388 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 ZBED2Q9BTP6 218 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 MRPL9Q9BYD2 267 aaKnown RBP21.05■□□□□ 0.96
VPS28-205ENST00000526204 C8orf4Q9NR00 106 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 AGPAT4Q9NRZ5 378 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 CD274Q9NZQ7 290 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 AURKCQ9UQB9 309 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 MYRFQ9Y2G1 1151 aa21.05■□□□□ 0.96
VPS28-205ENST00000526204 CHD5Q8TDI0 1954 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 GREB1Q4ZG55 1949 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 COCHO43405 550 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 NIPSNAP2O75323 286 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 NPPAP01160 153 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 ESR1P03372 595 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 CKMT2P17540 419 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 FASP25445 335 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 CORO1AP31146 461 aaKnown RBP21.04■□□□□ 0.96
VPS28-205ENST00000526204 AGTR2P50052 363 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 GATMP50440 423 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 ERVK-8P63133 956 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 CTSL3PQ5NE16 218 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 ADGRF1Q5T601 910 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 STK40Q8N2I9 435 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 ZFP28Q8NHY6 868 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 TMEM125Q96AQ2 219 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 LINGO1Q96FE5 620 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 MYRFLQ96LU7 910 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 EGFL7Q9UHF1 273 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 LEF1Q9UJU2 399 aaPredicted RBP21.04■□□□□ 0.96
VPS28-205ENST00000526204 CCDC160A6NGH7 325 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 CCDC154A6NI56 674 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 C9JVG2 144 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 E5RI56 91 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 ARPC2O15144 300 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 STC2O76061 302 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 FCGR1AP12314 374 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 CHRM3P20309 590 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 FBXO48Q5FWF7 155 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 PRSS55Q6UWB4 352 aaPredicted RBP21.04■□□□□ 0.96
VPS28-205ENST00000526204 DBF4BQ8NFT6 615 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 ZNF382Q96SR6 550 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 MUC3BQ9H195 1237 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 STARD7Q9NQZ5 370 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 ZIM2Q9NZV7 527 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 SUN2Q9UH99 717 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 ZNF225Q9UK10 706 aa21.04■□□□□ 0.96
VPS28-205ENST00000526204 CASP8AP2Q9UKL3 1982 aa21.03■□□□□ 0.96
VPS28-205ENST00000526204 A0A1W2PQ45 241 aaPredicted RBP21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms