RNA–Protein interactions for RNA: ENST00000524955.1

CHMP4A-202, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 268 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-202ENST00000524955 ZNF548Q8NEK5 533 aaPredicted RBP4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 UHMK1Q8TAS1 419 aaKnown RBP4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 SAP25Q8TEE9 199 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 STYXQ8WUJ0 223 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 JPH3Q8WXH2 748 aaPredicted RBP4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 ZBTB9Q96C00 473 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 MRRFQ96E11 262 aaKnown RBP4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 STAMBPL1Q96FJ0 436 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 COX14Q96I36 57 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 SIGLEC10Q96LC7 697 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 C9orf72Q96LT7 481 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 TTC25Q96NG3 672 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 RUNDC3BQ96NL0 473 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 PLEKHG4BQ96PX9 1271 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 RANBP9Q96S59 729 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 NRTNQ99748 197 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 ZSCAN5AQ9BUG6 496 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 SLC13A1Q9BZW2 595 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 IL22Q9GZX6 179 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 OSGEPL1Q9H4B0 414 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 PLAC1Q9HBJ0 212 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 TRIM39Q9HCM9 518 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 SAYSD1Q9NPB0 183 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 C20orf96Q9NUD7 363 aaPredicted RBP4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 SPATS2LQ9NUQ6 558 aaKnown RBP4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 DNAAF2Q9NVR5 837 aaKnown RBP4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 BFARQ9NZS9 450 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 SAMD15Q9P1V8 674 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 FEZ2Q9UHY8 353 aaPredicted RBP4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 CDV3Q9UKY7 258 aaKnown RBP4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 SOX13Q9UN79 622 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 PSMD13Q9UNM6 376 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 DOLKQ9UPQ8 538 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 UTP11Q9Y3A2 253 aaKnown RBP4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 RPS6KL1Q9Y6S9 549 aa4.55□□□□□ -1.68
CHMP4A-202ENST00000524955 FRYLO94915 3013 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 NCOR1O75376 2440 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 TNRC6BQ9UPQ9 1833 aaKnown RBP4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 ZCWPW2A0A1B0GU75 182 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 UBA6A0AVT1 1052 aaPredicted RBP4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 CPED1A4D0V7 1026 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 RGSL1A5PLK6 1076 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 H3BM21 787 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 CD3EAPO15446 510 aaKnown RBP4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 SGTAO43765 313 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 MAGEC1O60732 1142 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 LRP3O75074 770 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 POP7O75817 140 aaKnown RBP4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 TOP3BO95985 862 aaKnown RBP4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 ANXA6P08133 673 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 SPINK2P20155 84 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 ITGALP20701 1170 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 KELP23276 732 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 ACRV1P26436 265 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 RPL10P27635 214 aaKnown RBP4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 HOXD11P31277 338 aaPredicted RBP4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 FMO4P31512 558 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 HADHAP40939 763 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 ACTR1BP42025 376 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 MAGEA3P43357 314 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 ARCN1P48444 511 aaKnown RBP4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 NOVA1P51513 510 aaKnown RBP4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 ARL4CP56559 192 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 ACTR1AP61163 376 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 HNRNPKP61978 463 aaKnown RBP eCLIP4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 SIM1P81133 766 aaPredicted RBP4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 MPP1Q00013 466 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 CDK16Q00536 496 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 PDE1BQ01064 536 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 CACNG1Q06432 222 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 CALCOCO2Q13137 446 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 ITGA9Q13797 1035 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 COL9A2Q14055 689 aaPredicted RBP4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 NFE2L1Q14494 772 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 HLTFQ14527 1009 aaKnown RBP eCLIP4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 NAA30Q147X3 362 aaPredicted RBP4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 MORF4L2Q15014 288 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 EFTUD2Q15029 972 aaKnown RBP eCLIP4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 HIF1AQ16665 826 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 INSCQ1MX18 579 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 FASTKD1Q53R41 847 aaKnown RBP4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 HSP90AA5PQ58FG0 334 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 DUS1LQ6P1R4 473 aaKnown RBP4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 GUSBP11Q6P575 273 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 AFTPHQ6ULP2 937 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 IL27RAQ6UWB1 636 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 UNC5AQ6ZN44 842 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 SNX20Q7Z614 316 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 PCGF5Q86SE9 256 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 DCP2Q8IU60 420 aaKnown RBP4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 GALNT13Q8IUC8 556 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 RAVER1Q8IY67 606 aaKnown RBP4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 ZBED8Q8IZ13 594 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 NXPE1Q8N323 547 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 CEP112Q8N8E3 955 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 Q8N9G6 341 aaPredicted RBP4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 LMNTD1Q8N9Z9 388 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 KYQ8NBH2 561 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 MCUQ8NE86 351 aa4.54□□□□□ -1.68
CHMP4A-202ENST00000524955 MNS1Q8NEH6 495 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms