RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 MAPK8P45983 427 aa10.08□□□□□ -0.8
MCF2-209ENST00000520602 PPP3CCP48454 512 aa10.08□□□□□ -0.8
MCF2-209ENST00000520602 AP1S1P61966 158 aa10.08□□□□□ -0.8
MCF2-209ENST00000520602 TRAF2Q12933 501 aa10.08□□□□□ -0.8
MCF2-209ENST00000520602 BLMHQ13867 455 aa10.08□□□□□ -0.8
MCF2-209ENST00000520602 TXNDC11Q6PKC3 985 aa10.08□□□□□ -0.8
MCF2-209ENST00000520602 CLEC14AQ86T13 490 aa10.08□□□□□ -0.8
MCF2-209ENST00000520602 ING5Q8WYH8 240 aa10.08□□□□□ -0.8
MCF2-209ENST00000520602 DLG3Q92796 817 aa10.08□□□□□ -0.8
MCF2-209ENST00000520602 FAM162AQ96A26 154 aa10.08□□□□□ -0.8
MCF2-209ENST00000520602 MYEOVQ96EZ4 313 aa10.08□□□□□ -0.8
MCF2-209ENST00000520602 RNF145Q96MT1 663 aa10.08□□□□□ -0.8
MCF2-209ENST00000520602 TMEM79Q9BSE2 394 aa10.08□□□□□ -0.8
MCF2-209ENST00000520602 COMMD8Q9NX08 183 aa10.08□□□□□ -0.8
MCF2-209ENST00000520602 LMCD1Q9NZU5 365 aa10.08□□□□□ -0.8
MCF2-209ENST00000520602 PTPRFP10586 1907 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 DRGXA6NNA5 263 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 LZTS3O60299 673 aaPredicted RBP10.07□□□□□ -0.8
MCF2-209ENST00000520602 TBC1D4O60343 1298 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 SLC22A3O75751 556 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 KRT6AP02538 564 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 KRT6BP04259 564 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 CD1DP15813 335 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 KRT6CP48668 564 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 C1QTNF8P60827 252 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 PRKG2Q13237 762 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 PDK3Q15120 406 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 ANO7Q6IWH7 933 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 CLHC1Q8NHS4 586 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 FIG4Q92562 907 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 PTERQ96BW5 349 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 PPM1MQ96MI6 270 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 PRPF18Q99633 342 aaKnown RBP10.07□□□□□ -0.8
MCF2-209ENST00000520602 CCT7Q99832 543 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 CLSTN3Q9BQT9 956 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 TDRD1Q9BXT4 1180 aaKnown RBP10.07□□□□□ -0.8
MCF2-209ENST00000520602 NLE1Q9NVX2 485 aaPredicted RBP10.07□□□□□ -0.8
MCF2-209ENST00000520602 KANSL1LA0AUZ9 987 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 MYO1DO94832 1006 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 MT-ND1P03886 318 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 ANXA5P08758 320 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 HOXC13P31276 330 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 PRMT2P55345 433 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 ACOX1Q15067 660 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 OR4D1Q15615 310 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 AP5B1Q2VPB7 878 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 UNC50Q53HI1 259 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 RNF220Q5VTB9 566 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 CNKSR3Q6P9H4 555 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 CERS6Q6ZMG9 384 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 SPPL2CQ8IUH8 684 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 MFSD6LQ8IWD5 586 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 ZNF786Q8N393 782 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 SH3RF2Q8TEC5 729 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 SELENOMQ8WWX9 145 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 GFM2Q969S9 779 aaKnown RBP10.07□□□□□ -0.8
MCF2-209ENST00000520602 SH3KBP1Q96B97 665 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 PAWRQ96IZ0 340 aaKnown RBP10.07□□□□□ -0.8
MCF2-209ENST00000520602 CCDC138Q96M89 665 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 RANBP9Q96S59 729 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 PKMYT1Q99640 499 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 ARNT2Q9HBZ2 717 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 C6orf203Q9P0P8 240 aaPredicted RBP10.07□□□□□ -0.8
MCF2-209ENST00000520602 ZNF646O15015 1829 aaPredicted RBP10.07□□□□□ -0.8
MCF2-209ENST00000520602 TEX28O15482 410 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 KERAO60938 352 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 CDK14O94921 469 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 CLPTM1O96005 669 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 FASP25445 335 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 GDF5P43026 501 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 DNAJB13P59910 316 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 POLR2LP62875 67 aaKnown RBP10.07□□□□□ -0.8
MCF2-209ENST00000520602 NRG1Q02297 640 aaPredicted RBP10.07□□□□□ -0.8
MCF2-209ENST00000520602 TTC23LQ6PF05 361 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 ELMSAN1Q6PJG2 1045 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 BNIPLQ7Z465 357 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 BBS7Q8IWZ6 715 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 SLC22A17Q8WUG5 538 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 ELMO1Q92556 727 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 NSMCE2Q96MF7 247 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 CIB1Q99828 191 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 TCF25Q9BQ70 676 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.07□□□□□ -0.8
MCF2-209ENST00000520602 PHF24Q9UPV7 400 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 TBC1D30Q9Y2I9 924 aa10.07□□□□□ -0.8
MCF2-209ENST00000520602 FAM149AA5PLN7 773 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 MTX2O75431 263 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 SMNDC1O75940 238 aaKnown RBP eCLIP10.06□□□□□ -0.8
MCF2-209ENST00000520602 ESRRBO95718 433 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 OTCP00480 354 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 ATXN1LP0C7T5 689 aaKnown RBP10.06□□□□□ -0.8
MCF2-209ENST00000520602 GNAZP19086 355 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 STK19P49842 368 aaPredicted RBP10.06□□□□□ -0.8
MCF2-209ENST00000520602 ABRQ12979 859 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 TRIM25Q14258 630 aaKnown RBP10.06□□□□□ -0.8
MCF2-209ENST00000520602 CHRNA6Q15825 494 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 MTX3Q5HYI7 312 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 GRAMD4Q6IC98 578 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 RALGPS2Q86X27 583 aaPredicted RBP10.06□□□□□ -0.8
MCF2-209ENST00000520602 PIANPQ8IYJ0 282 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms