RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 TP53BP2Q13625 1128 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 LDLRAP1Q5SW96 308 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 BRSK1Q8TDC3 778 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 MRPS26Q9BYN8 205 aaKnown RBP11.62□□□□□ -0.55
SYNPO-204ENST00000519664 ARID1BQ8NFD5 2236 aaPredicted RBP11.62□□□□□ -0.55
SYNPO-204ENST00000519664 E7ENX8 843 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 SNAP91O60641 907 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 F2P00734 622 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 ANXA6P08133 673 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 GJA1P17302 382 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 GRK3P35626 688 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 FBXW4P57775 412 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 FKBP1BP68106 108 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 NDUFA5Q16718 116 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 ZNF792Q3KQV3 632 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 CRTC3Q6UUV7 619 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 OTOP2Q7RTS6 562 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 OR10A6Q8NH74 314 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 APOL4Q9BPW4 351 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 ASAH2Q9NR71 780 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 C3orf18Q9UK00 162 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 GMPPBQ9Y5P6 360 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 ANKDD1BA6NHY2 528 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 TP73O15350 636 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 HOXA11P31270 313 aaPredicted RBP11.62□□□□□ -0.55
SYNPO-204ENST00000519664 GNPDA1P46926 289 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 CASP9P55211 416 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 HMGCS1Q01581 520 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 BNIP2Q12982 314 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 RAET1GQ6H3X3 334 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 RELL1Q8IUW5 271 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 ZNF540Q8NDQ6 660 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 ST13P5Q8NFI4 369 aaPredicted RBP11.62□□□□□ -0.55
SYNPO-204ENST00000519664 CD99L2Q8TCZ2 262 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 HOPXQ9BPY8 73 aaPredicted RBP11.62□□□□□ -0.55
SYNPO-204ENST00000519664 GDAP2Q9NXN4 497 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 SIRPGQ9P1W8 387 aa11.62□□□□□ -0.55
SYNPO-204ENST00000519664 RSL24D1Q9UHA3 163 aaKnown RBP11.62□□□□□ -0.55
SYNPO-204ENST00000519664 TRAV19A0A0A6YYK7 116 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 GLYATL1P3A0A0U1RQE8 302 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 TRIM43BA6NCK2 446 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 PIRO00625 290 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 STK16O75716 305 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 CDH3P22223 829 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 BLVRAP53004 296 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 XIAPP98170 497 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 RGS21Q2M5E4 152 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 ZNF549Q6P9A3 640 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 MTERF3Q96E29 417 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 KCNA7Q96RP8 456 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 MIPEPQ99797 713 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 TPRKBQ9Y3C4 175 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 GMEB1Q9Y692 573 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 H0Y858 1186 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 ALPIP09923 528 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 FGF3P11487 239 aaPredicted RBP11.61□□□□□ -0.55
SYNPO-204ENST00000519664 ADSLP30566 484 aaPredicted RBP11.61□□□□□ -0.55
SYNPO-204ENST00000519664 CCNFP41002 786 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 RPIAP49247 311 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 EMC10Q5UCC4 262 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 SDE2Q6IQ49 451 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 SERPINA9Q86WD7 417 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 PTCD2Q8WV60 388 aaKnown RBP11.61□□□□□ -0.55
SYNPO-204ENST00000519664 BTN2A2Q8WVV5 523 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 CDKN2AIPNLQ96HQ2 116 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 PHF12Q96QT6 1004 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 BRD9Q9H8M2 597 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 CNOT6Q9ULM6 557 aaKnown RBP11.61□□□□□ -0.55
SYNPO-204ENST00000519664 ASCC3Q8N3C0 2202 aaKnown RBP11.61□□□□□ -0.55
SYNPO-204ENST00000519664 MTX2O75431 263 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 ZBTB48P10074 688 aaPredicted RBP11.61□□□□□ -0.55
SYNPO-204ENST00000519664 CDH15P55291 814 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 LPIN1Q14693 890 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 ALFQ53S48 1182 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 SIRPB2Q5JXA9 342 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 TXNDC11Q6PKC3 985 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 SERPINA13PQ6UXR4 307 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 C10orf71Q711Q0 1435 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 ZNF598Q86UK7 904 aaKnown RBP11.61□□□□□ -0.55
SYNPO-204ENST00000519664 FBXO27Q8NI29 283 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 HAPLN3Q96S86 360 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 AKTIPQ9H8T0 292 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 SELENONQ9NZV5 590 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 TBC1D30Q9Y2I9 924 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 CPQQ9Y646 472 aa11.61□□□□□ -0.55
SYNPO-204ENST00000519664 A0A1B0GVM2 712 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 TCAF2A6NFQ2 919 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 E7ESA3 106 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 CDC7O00311 574 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 FTH1P02794 183 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 ALOX12P18054 663 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 YAP1P46937 504 aaKnown RBP11.6□□□□□ -0.55
SYNPO-204ENST00000519664 ST13P50502 369 aaKnown RBP11.6□□□□□ -0.55
SYNPO-204ENST00000519664 PPP1R3AQ16821 1122 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 DEFB115Q30KQ5 88 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 FBXO22Q8NEZ5 403 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 OR10Q1Q8NGQ4 319 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 NFKBIZQ9BYH8 718 aa11.6□□□□□ -0.55
SYNPO-204ENST00000519664 ERAL1O75616 437 aaKnown RBP11.6□□□□□ -0.55
SYNPO-204ENST00000519664 CXCL14O95715 111 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms