RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 PEX6Q13608 980 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 SPARCL1Q14515 664 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 TCEA2Q15560 299 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 CLPPQ16740 277 aaPredicted RBP9.59□□□□□ -0.87
RNF4-221ENST00000513643 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.59□□□□□ -0.87
RNF4-221ENST00000513643 ZNF648Q5T619 568 aaPredicted RBP9.59□□□□□ -0.87
RNF4-221ENST00000513643 SLC30A9Q6PML9 568 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 WASH2PQ6VEQ5 465 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 ARHGEF18Q6ZSZ5 1173 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 SPRED1Q7Z699 444 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 PHYKPLQ8IUZ5 450 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 OR4K2Q8NGD2 314 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 PATE1Q8WXA2 126 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 OR2AG1Q9H205 316 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 LRRN3Q9H3W5 708 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 DPEP2Q9H4A9 486 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 UGT1A7Q9HAW7 530 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 UGT1A10Q9HAW8 530 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 UGT1A8Q9HAW9 530 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 ETNK1Q9HBU6 452 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 ARFGAP3Q9NP61 516 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 WASH6PQ9NQA3 447 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 SIRPGQ9P1W8 387 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 LRIT1Q9P2V4 623 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 TBC1D29Q9UFV1 150 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 MOSPD1Q9UJG1 213 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 ZMIZ1Q9ULJ6 1067 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 NEU2Q9Y3R4 380 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 PRKAB1Q9Y478 270 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 GPSM3Q9Y4H4 160 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 PCDHB1Q9Y5F3 818 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 ENTPD2Q9Y5L3 495 aa9.59□□□□□ -0.87
RNF4-221ENST00000513643 DNMT3AQ9Y6K1 912 aaPredicted RBP9.59□□□□□ -0.87
RNF4-221ENST00000513643 MYLKQ15746 1914 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 MGAQ8IWI9 3026 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 IGLV3-16A0A075B6K0 115 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 GLYATL1P3A0A0U1RQE8 302 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 STX7O15400 261 aaKnown RBP9.58□□□□□ -0.88
RNF4-221ENST00000513643 GPR39O43194 453 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 KCNJ13O60928 360 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 CSO75390 466 aaKnown RBP9.58□□□□□ -0.88
RNF4-221ENST00000513643 MTX2O75431 263 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 SRP72O76094 671 aaKnown RBP9.58□□□□□ -0.88
RNF4-221ENST00000513643 CDK14O94921 469 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 ASMTLO95671 621 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 CRTAMO95727 393 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 BRAFP15056 766 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 CD1CP29017 333 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 CCKBRP32239 447 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 RPL22P35268 128 aaKnown RBP9.58□□□□□ -0.88
RNF4-221ENST00000513643 FDFT1P37268 417 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 ACTR1BP42025 376 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 LSSP48449 732 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 MAZP56270 477 aaKnown RBP9.58□□□□□ -0.88
RNF4-221ENST00000513643 ACTR1AP61163 376 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 UBE2IP63279 158 aaKnown RBP9.58□□□□□ -0.88
RNF4-221ENST00000513643 PDE1BQ01064 536 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 CFHR1Q03591 330 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 ACVR1Q04771 509 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 DMPKQ09013 629 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 NFATC2Q13469 925 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 CYP1B1Q16678 543 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 ST3GAL2Q16842 350 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 ZNF658BQ4V348 819 aaPredicted RBP9.58□□□□□ -0.88
RNF4-221ENST00000513643 LDLRAP1Q5SW96 308 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 GPRC6AQ5T6X5 926 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 ABRAXAS1Q6UWZ7 409 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 RBM44Q6ZP01 1051 aaKnown RBP9.58□□□□□ -0.88
RNF4-221ENST00000513643 MARK2Q7KZI7 788 aaKnown RBP9.58□□□□□ -0.88
RNF4-221ENST00000513643 TMPRSS9Q7Z410 1059 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 PRUNE1Q86TP1 453 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 SLITRK4Q8IW52 837 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 RASGEF1AQ8N9B8 481 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 OR13C4Q8NGS5 318 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 ZNF398Q8TD17 642 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 MAIP1Q8WWC4 291 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 PBKQ96KB5 322 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 LINC00615Q96LM1 132 aaPredicted RBP9.58□□□□□ -0.88
RNF4-221ENST00000513643 DEPDC7Q96QD5 511 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 TIMM29Q9BSF4 260 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 ABCG4Q9H172 646 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 CCDC86Q9H6F5 360 aaKnown RBP9.58□□□□□ -0.88
RNF4-221ENST00000513643 CASS4Q9NQ75 786 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 HOMER3Q9NSC5 361 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 PDP2Q9P2J9 529 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 ZNHIT2Q9UHR6 403 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 RIMKLBQ9ULI2 386 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 ZNF148Q9UQR1 794 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 PKP3Q9Y446 797 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 PCDHGA8Q9Y5G5 932 aa9.58□□□□□ -0.88
RNF4-221ENST00000513643 SRRM3A6NNA2 597 aaPredicted RBP9.57□□□□□ -0.88
RNF4-221ENST00000513643 B4DGG1 531 aa9.57□□□□□ -0.88
RNF4-221ENST00000513643 D6RAR5 112 aa9.57□□□□□ -0.88
RNF4-221ENST00000513643 CES2O00748 559 aa9.57□□□□□ -0.88
RNF4-221ENST00000513643 KMOO15229 486 aa9.57□□□□□ -0.88
RNF4-221ENST00000513643 ZSCAN12O43309 604 aa9.57□□□□□ -0.88
RNF4-221ENST00000513643 CEP104O60308 925 aa9.57□□□□□ -0.88
RNF4-221ENST00000513643 PTMAP06454 111 aaKnown RBP9.57□□□□□ -0.88
RNF4-221ENST00000513643 ZSCAN5DPP0CG00 497 aa9.57□□□□□ -0.88
RNF4-221ENST00000513643 ACP5P13686 325 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms