RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 ZNF542PQ5EBM4 170 aa29.31■■■□□ 2.28
LIMCH1-211ENST00000509638 CAPN12Q6ZSI9 719 aa29.31■■■□□ 2.28
LIMCH1-211ENST00000509638 UNC5BQ8IZJ1 945 aa29.31■■■□□ 2.28
LIMCH1-211ENST00000509638 GPR161Q8N6U8 529 aaKnown RBP29.31■■■□□ 2.28
LIMCH1-211ENST00000509638 OR1E3Q8WZA6 343 aa29.31■■■□□ 2.28
LIMCH1-211ENST00000509638 C9orf72Q96LT7 481 aa29.31■■■□□ 2.28
LIMCH1-211ENST00000509638 GTPBP2Q9BX10 602 aaKnown RBP29.31■■■□□ 2.28
LIMCH1-211ENST00000509638 OR2AG1Q9H205 316 aa29.31■■■□□ 2.28
LIMCH1-211ENST00000509638 VPS18Q9P253 973 aa29.31■■■□□ 2.28
LIMCH1-211ENST00000509638 PRSS38A1L453 326 aa29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 CD3EAPO15446 510 aaKnown RBP29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 MAGEA4P43358 317 aa29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 SEMA3AQ14563 771 aa29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 DBN1Q16643 649 aa29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 ERCC6LQ2NKX8 1250 aa29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 PRAMEF14Q5SWL7 426 aa29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 IL27RAQ6UWB1 636 aa29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 CEP128Q6ZU80 1094 aa29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 MARK2Q7KZI7 788 aaKnown RBP29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 PNPLA1Q8N8W4 532 aa29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 TSACCQ96A04 125 aaPredicted RBP29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 CCDC97Q96F63 343 aaPredicted RBP29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 ZCCHC2Q9C0B9 1178 aaKnown RBP29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 TSPYL1Q9H0U9 437 aa29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 ERVMER34-1Q9H9K5 563 aa29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 TRIM39Q9HCM9 518 aa29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 ATXN10Q9UBB4 475 aa29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 MOSPD1Q9UJG1 213 aa29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 TNFRSF8P28908 595 aa29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 SRP54P61011 504 aaKnown RBP29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 HLA-BQ31612 363 aa29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 AARS2Q5JTZ9 985 aaKnown RBP29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 ADGRG6Q86SQ4 1221 aa29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 KCNMB4Q86W47 210 aa29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 OR2I1PQ8NGU4 316 aa29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 COPS8Q99627 209 aa29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 CAAP1Q9H8G2 361 aa29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 DYNC1LI1Q9Y6G9 523 aaKnown RBP29.3■■■□□ 2.28
LIMCH1-211ENST00000509638 CABIN1Q9Y6J0 2220 aa29.29■■■□□ 2.28
LIMCH1-211ENST00000509638 PIKFYVEQ9Y2I7 2098 aa29.29■■■□□ 2.28
LIMCH1-211ENST00000509638 TNFRSF10CO14798 259 aa29.29■■■□□ 2.28
LIMCH1-211ENST00000509638 PPARDQ03181 441 aa29.29■■■□□ 2.28
LIMCH1-211ENST00000509638 LDB1Q86U70 411 aaPredicted RBP29.29■■■□□ 2.28
LIMCH1-211ENST00000509638 HID1Q8IV36 788 aa29.29■■■□□ 2.28
LIMCH1-211ENST00000509638 GSDMBQ8TAX9 411 aa29.29■■■□□ 2.28
LIMCH1-211ENST00000509638 CERS2Q96G23 380 aa29.29■■■□□ 2.28
LIMCH1-211ENST00000509638 ELF4Q99607 663 aaPredicted RBP29.29■■■□□ 2.28
LIMCH1-211ENST00000509638 CYP4F12Q9HCS2 524 aa29.29■■■□□ 2.28
LIMCH1-211ENST00000509638 ZDHHC3Q9NYG2 299 aa29.29■■■□□ 2.28
LIMCH1-211ENST00000509638 KLF15Q9UIH9 416 aa29.29■■■□□ 2.28
LIMCH1-211ENST00000509638 CER1O95813 267 aa29.28■■■□□ 2.28
LIMCH1-211ENST00000509638 MYBL2P10244 700 aa29.28■■■□□ 2.28
LIMCH1-211ENST00000509638 NME1P15531 152 aaKnown RBP29.28■■■□□ 2.28
LIMCH1-211ENST00000509638 MSH3P20585 1137 aa29.28■■■□□ 2.28
LIMCH1-211ENST00000509638 TGM1P22735 817 aa29.28■■■□□ 2.28
LIMCH1-211ENST00000509638 THOC5Q13769 683 aaKnown RBP29.28■■■□□ 2.28
LIMCH1-211ENST00000509638 ZNF423Q2M1K9 1284 aa29.28■■■□□ 2.28
LIMCH1-211ENST00000509638 ZNF470Q6ECI4 717 aa29.28■■■□□ 2.28
LIMCH1-211ENST00000509638 MRNIPQ6NTE8 343 aa29.28■■■□□ 2.28
LIMCH1-211ENST00000509638 NEPROQ6NW34 567 aa29.28■■■□□ 2.28
LIMCH1-211ENST00000509638 TRMT10BQ6PF06 316 aaKnown RBP29.28■■■□□ 2.28
LIMCH1-211ENST00000509638 RD3Q7Z3Z2 195 aa29.28■■■□□ 2.28
LIMCH1-211ENST00000509638 PALM2Q8IXS6 379 aa29.28■■■□□ 2.28
LIMCH1-211ENST00000509638 PHACTR4Q8IZ21 702 aa29.28■■■□□ 2.28
LIMCH1-211ENST00000509638 RBFAQ8N0V3 343 aa29.28■■■□□ 2.28
LIMCH1-211ENST00000509638 OXR1Q8N573 874 aa29.28■■■□□ 2.28
LIMCH1-211ENST00000509638 TTC25Q96NG3 672 aa29.28■■■□□ 2.28
LIMCH1-211ENST00000509638 GAREM1Q9H706 876 aa29.28■■■□□ 2.28
LIMCH1-211ENST00000509638 CARS2Q9HA77 564 aaKnown RBP29.28■■■□□ 2.28
LIMCH1-211ENST00000509638 SUFUQ9UMX1 484 aa29.28■■■□□ 2.28
LIMCH1-211ENST00000509638 VEGFDO43915 354 aa29.27■■■□□ 2.28
LIMCH1-211ENST00000509638 CSF2P04141 144 aa29.27■■■□□ 2.28
LIMCH1-211ENST00000509638 ERVK-10P10266 1014 aa29.27■■■□□ 2.28
LIMCH1-211ENST00000509638 ZNF8P17098 575 aaPredicted RBP29.27■■■□□ 2.28
LIMCH1-211ENST00000509638 HK3P52790 923 aa29.27■■■□□ 2.28
LIMCH1-211ENST00000509638 ATXN3P54252 364 aaPredicted RBP29.27■■■□□ 2.28
LIMCH1-211ENST00000509638 B4GALNT1Q00973 533 aa29.27■■■□□ 2.28
LIMCH1-211ENST00000509638 TMEM115Q12893 351 aaPredicted RBP29.27■■■□□ 2.28
LIMCH1-211ENST00000509638 CERS6Q6ZMG9 384 aa29.27■■■□□ 2.28
LIMCH1-211ENST00000509638 PRR23CQ6ZRP0 262 aa29.27■■■□□ 2.28
LIMCH1-211ENST00000509638 EIF1ADQ8N9N8 165 aaKnown RBP29.27■■■□□ 2.28
LIMCH1-211ENST00000509638 DCUN1D1Q96GG9 259 aa29.27■■■□□ 2.28
LIMCH1-211ENST00000509638 BOCQ9BWV1 1114 aa29.27■■■□□ 2.28
LIMCH1-211ENST00000509638 TCEAL2Q9H3H9 227 aaPredicted RBP29.27■■■□□ 2.28
LIMCH1-211ENST00000509638 IL21RQ9HBE5 538 aa29.27■■■□□ 2.28
LIMCH1-211ENST00000509638 PPANQ9NQ55 473 aaKnown RBP29.27■■■□□ 2.28
LIMCH1-211ENST00000509638 APOBEC3BQ9UH17 382 aaKnown RBP29.27■■■□□ 2.28
LIMCH1-211ENST00000509638 ZFC3H1O60293 1989 aaKnown RBP29.27■■■□□ 2.28
LIMCH1-211ENST00000509638 IGLV3-16A0A075B6K0 115 aa29.26■■■□□ 2.28
LIMCH1-211ENST00000509638 SCAMP1O15126 338 aa29.26■■■□□ 2.28
LIMCH1-211ENST00000509638 CDK14O94921 469 aa29.26■■■□□ 2.28
LIMCH1-211ENST00000509638 RASGRP1O95267 797 aa29.26■■■□□ 2.28
LIMCH1-211ENST00000509638 FUCA1P04066 466 aa29.26■■■□□ 2.28
LIMCH1-211ENST00000509638 IVLP07476 585 aa29.26■■■□□ 2.28
LIMCH1-211ENST00000509638 JUNDP17535 347 aa29.26■■■□□ 2.28
LIMCH1-211ENST00000509638 SSTR1P30872 391 aa29.26■■■□□ 2.28
LIMCH1-211ENST00000509638 GNPDA1P46926 289 aa29.26■■■□□ 2.28
LIMCH1-211ENST00000509638 ARRB1P49407 418 aaPredicted RBP29.26■■■□□ 2.28
LIMCH1-211ENST00000509638 TTPAP49638 278 aa29.26■■■□□ 2.28
LIMCH1-211ENST00000509638 GTF2H3Q13889 308 aa29.26■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms