RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 PSAPL1Q6NUJ1 521 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 GPR153Q6NV75 609 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 CYHR1Q6ZMK1 362 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 FRA10AC1Q70Z53 315 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 RPS27LQ71UM5 84 aaKnown RBP11.88□□□□□ -0.51
NUP54-202ENST00000502850 FAM217AQ8IXS0 508 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 SLC39A11Q8N1S5 342 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 MARVELD2Q8N4S9 558 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 MINDY1Q8N5J2 469 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 PCDH20Q8N6Y1 951 aaKnown RBP11.88□□□□□ -0.51
NUP54-202ENST00000502850 CD200R1Q8TD46 325 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 ZNF382Q96SR6 550 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 FEM1AQ9BSK4 669 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 RNF38Q9H0F5 515 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 SDR39U1Q9NRG7 319 aaPredicted RBP11.88□□□□□ -0.51
NUP54-202ENST00000502850 POLG2Q9UHN1 485 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 GNPTGQ9UJJ9 305 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 APPL1Q9UKG1 709 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 PCTPQ9UKL6 214 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 SUFUQ9UMX1 484 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 INSL5Q9Y5Q6 135 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 ACTL7AQ9Y615 435 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 C15orf38-AP3S2A0A0A6YYH1 394 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 C2orf78A6NCI8 922 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 TRIM43BA6NCK2 446 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 GRXCR2A6NFK2 248 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 NR5A2O00482 541 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 TXNDC9O14530 226 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 AP1G1O43747 822 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 UPP2O95045 317 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 PGLSO95336 258 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 ALDOCP09972 364 aaKnown RBP11.87□□□□□ -0.51
NUP54-202ENST00000502850 PFKLP17858 780 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 ITGALP20701 1170 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 SLC7A1P30825 629 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 CHN2P52757 468 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 PTPN5P54829 565 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 CCL23P55773 120 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 MS4A2Q01362 244 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 GRM2Q14416 872 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 RBBP7Q16576 425 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 SETMARQ53H47 684 aaPredicted RBP11.87□□□□□ -0.51
NUP54-202ENST00000502850 CTSL3PQ5NE16 218 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 MPP7Q5T2T1 576 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 Q6ZNB5 142 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 GPRIN3Q6ZVF9 776 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 TAS2R42Q7RTR8 314 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 ARPINQ7Z6K5 226 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 DNAJB7Q7Z6W7 309 aaPredicted RBP11.87□□□□□ -0.51
NUP54-202ENST00000502850 PHYKPLQ8IUZ5 450 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 RBFAQ8N0V3 343 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 CPXM2Q8N436 756 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 TRIM43Q96BQ3 446 aaPredicted RBP11.87□□□□□ -0.51
NUP54-202ENST00000502850 HGH1Q9BTY7 390 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 TRIM54Q9BYV2 358 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 CLPBQ9H078 707 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 COPS7BQ9H9Q2 264 aaPredicted RBP11.87□□□□□ -0.51
NUP54-202ENST00000502850 SPG21Q9NZD8 308 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 CD274Q9NZQ7 290 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 IL17CQ9P0M4 197 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 DNMT3BQ9UBC3 853 aaKnown RBP11.87□□□□□ -0.51
NUP54-202ENST00000502850 ABCD2Q9UBJ2 740 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 CD300AQ9UGN4 299 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 VPS51Q9UID3 782 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 AP4S1Q9Y587 144 aa11.87□□□□□ -0.51
NUP54-202ENST00000502850 ATP6AP2A0A1C7CYW4 349 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 TCRBV3S1A0A5B6 114 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 AQP12BA6NM10 295 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 CDC7O00311 574 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 GFRA2O00451 464 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 SNAP91O60641 907 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 EFCAB14O75071 495 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 NIPSNAP2O75323 286 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 ATP6AP2O75787 350 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 TSPAN12O95859 305 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 CD160O95971 181 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 IGSF6O95976 241 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 NPPAP01160 153 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 CLTBP09497 229 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 PRR35P0CG20 571 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 HGFP14210 728 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 CD1EP15812 388 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 TSPAN8P19075 237 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 PPM1AP35813 382 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 CSKP41240 450 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 KCNK10P57789 538 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 FOLH1Q04609 750 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 BCL2L1Q07817 233 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 INPP5AQ14642 412 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 PDK3Q15120 406 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 PDCD4Q53EL6 469 aaKnown RBP11.86□□□□□ -0.51
NUP54-202ENST00000502850 XKR7Q5GH72 579 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 METTL2BQ6P1Q9 378 aaKnown RBP11.86□□□□□ -0.51
NUP54-202ENST00000502850 PAOXQ6QHF9 649 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 PRR23BQ6ZRT6 265 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 DEFB128Q7Z7B8 93 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 DDX53Q86TM3 631 aaKnown RBP11.86□□□□□ -0.51
NUP54-202ENST00000502850 DHFR2Q86XF0 187 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 TICAM1Q8IUC6 712 aa11.86□□□□□ -0.51
NUP54-202ENST00000502850 AQP12AQ8IXF9 295 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms