RNA–Protein interactions for RNA: ENST00000498725.5

CCDC171-209, Transcript of coiled-coil domain containing 171, humanhuman

TSL 3

Gene CCDC171, Length 498 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-209ENST00000498725 TICAM1Q8IUC6 712 aa8.99□□□□□ -0.97
CCDC171-209ENST00000498725 NDUFAF2Q8N183 169 aa8.99□□□□□ -0.97
CCDC171-209ENST00000498725 BBS5Q8N3I7 341 aa8.99□□□□□ -0.97
CCDC171-209ENST00000498725 CISD2Q8N5K1 135 aaKnown RBP8.99□□□□□ -0.97
CCDC171-209ENST00000498725 Q8NA96 180 aa8.99□□□□□ -0.97
CCDC171-209ENST00000498725 SIDT2Q8NBJ9 832 aaKnown RBP8.99□□□□□ -0.97
CCDC171-209ENST00000498725 NSMCE1Q8WV22 266 aa8.99□□□□□ -0.97
CCDC171-209ENST00000498725 PIH1D2Q8WWB5 315 aa8.99□□□□□ -0.97
CCDC171-209ENST00000498725 MR1Q95460 341 aa8.99□□□□□ -0.97
CCDC171-209ENST00000498725 ZNF653Q96CK0 615 aa8.99□□□□□ -0.97
CCDC171-209ENST00000498725 ZNF599Q96NL3 588 aa8.99□□□□□ -0.97
CCDC171-209ENST00000498725 MCCC1Q96RQ3 725 aaPredicted RBP8.99□□□□□ -0.97
CCDC171-209ENST00000498725 MLPHQ9BV36 600 aaPredicted RBP8.99□□□□□ -0.97
CCDC171-209ENST00000498725 NUDT9Q9BW91 350 aa8.99□□□□□ -0.97
CCDC171-209ENST00000498725 BRD8Q9H0E9 1235 aa8.99□□□□□ -0.97
CCDC171-209ENST00000498725 OR2AG1Q9H205 316 aa8.99□□□□□ -0.97
CCDC171-209ENST00000498725 EPB41L1Q9H4G0 881 aa8.99□□□□□ -0.97
CCDC171-209ENST00000498725 PDE7BQ9NP56 450 aa8.99□□□□□ -0.97
CCDC171-209ENST00000498725 ETNK2Q9NVF9 386 aa8.99□□□□□ -0.97
CCDC171-209ENST00000498725 ASF1BQ9NVP2 202 aa8.99□□□□□ -0.97
CCDC171-209ENST00000498725 CWC15Q9P013 229 aaKnown RBP8.99□□□□□ -0.97
CCDC171-209ENST00000498725 CNOT6Q9ULM6 557 aaKnown RBP8.99□□□□□ -0.97
CCDC171-209ENST00000498725 CHKBQ9Y259 395 aa8.99□□□□□ -0.97
CCDC171-209ENST00000498725 SLC5A6Q9Y289 635 aa8.99□□□□□ -0.97
CCDC171-209ENST00000498725 TTLL3Q9Y4R7 772 aa8.99□□□□□ -0.97
CCDC171-209ENST00000498725 PCDHGA9Q9Y5G4 932 aaKnown RBP8.99□□□□□ -0.97
CCDC171-209ENST00000498725 PRRC2CQ9Y520 2896 aaKnown RBP8.98□□□□□ -0.97
CCDC171-209ENST00000498725 IGHV5-51A0A0C4DH38 117 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 WIPF3A6NGB9 483 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 OR5K4A6NMS3 321 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 C21orf140B9A014 251 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 DDX3YO15523 660 aaKnown RBP8.98□□□□□ -0.97
CCDC171-209ENST00000498725 PRPSAP2O60256 369 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 PYGLP06737 847 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 EBLN1P0CF75 366 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 FOLR1P15328 257 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 ZNF8P17098 575 aaPredicted RBP8.98□□□□□ -0.97
CCDC171-209ENST00000498725 RPL10P27635 214 aaKnown RBP8.98□□□□□ -0.97
CCDC171-209ENST00000498725 HNRNPH3P31942 346 aaKnown RBP8.98□□□□□ -0.97
CCDC171-209ENST00000498725 HSPA9P38646 679 aaKnown RBP8.98□□□□□ -0.97
CCDC171-209ENST00000498725 SLC19A1P41440 591 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 STC1P52823 247 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 RIPPLY3P57055 190 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 JAM2P57087 298 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 UBE2IP63279 158 aaKnown RBP8.98□□□□□ -0.97
CCDC171-209ENST00000498725 CDK18Q07002 472 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 ELOAQ14241 798 aaKnown RBP8.98□□□□□ -0.97
CCDC171-209ENST00000498725 NAA30Q147X3 362 aaPredicted RBP8.98□□□□□ -0.97
CCDC171-209ENST00000498725 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.98□□□□□ -0.97
CCDC171-209ENST00000498725 PPP1R15BQ5SWA1 713 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 MARC1Q5VT66 337 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 ZNF765Q7L2R6 523 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 MCOLN2Q8IZK6 566 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 ATPAF2Q8N5M1 289 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 ARFGAP1Q8N6T3 406 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 RBMXL3Q8N7X1 1067 aaKnown RBP8.98□□□□□ -0.97
CCDC171-209ENST00000498725 MLKLQ8NB16 471 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 TTC13Q8NBP0 860 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 LPCAT1Q8NF37 534 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 FDCSPQ8NFU4 85 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 THAP4Q8WY91 577 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 SNRNP40Q96DI7 357 aaKnown RBP8.98□□□□□ -0.97
CCDC171-209ENST00000498725 WDR24Q96S15 920 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 AGPAT1Q99943 283 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 MGME1Q9BQP7 344 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 TRIM7Q9C029 511 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 VPS18Q9P253 973 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 ZNF624Q9P2J8 865 aaPredicted RBP8.98□□□□□ -0.97
CCDC171-209ENST00000498725 ATXN10Q9UBB4 475 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 SLC23A2Q9UGH3 650 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 RARRES3Q9UL19 164 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 FARSAQ9Y285 508 aaKnown RBP8.98□□□□□ -0.97
CCDC171-209ENST00000498725 CCDC88CQ9P219 2028 aa8.98□□□□□ -0.97
CCDC171-209ENST00000498725 HIVEP3Q5T1R4 2406 aa8.97□□□□□ -0.97
CCDC171-209ENST00000498725 A0A0J9YYE9 177 aa8.97□□□□□ -0.97
CCDC171-209ENST00000498725 C1orf232A0A0U1RR37 186 aa8.97□□□□□ -0.97
CCDC171-209ENST00000498725 OR52A4PA6NMU1 304 aa8.97□□□□□ -0.97
CCDC171-209ENST00000498725 MAFKO60675 156 aa8.97□□□□□ -0.97
CCDC171-209ENST00000498725 RNF8O76064 485 aa8.97□□□□□ -0.97
CCDC171-209ENST00000498725 MTA2O94776 668 aa8.97□□□□□ -0.97
CCDC171-209ENST00000498725 PEX11BO96011 259 aa8.97□□□□□ -0.97
CCDC171-209ENST00000498725 TRBC1P01850 177 aa8.97□□□□□ -0.97
CCDC171-209ENST00000498725 SLC4A1P02730 911 aa8.97□□□□□ -0.97
CCDC171-209ENST00000498725 PRF1P14222 555 aa8.97□□□□□ -0.97
CCDC171-209ENST00000498725 ZNF30P17039 623 aa8.97□□□□□ -0.97
CCDC171-209ENST00000498725 NELFEP18615 380 aaKnown RBP8.97□□□□□ -0.97
CCDC171-209ENST00000498725 XRCC1P18887 633 aaPredicted RBP8.97□□□□□ -0.97
CCDC171-209ENST00000498725 MIPP30301 263 aa8.97□□□□□ -0.97
CCDC171-209ENST00000498725 ARL4DP49703 201 aa8.97□□□□□ -0.97
CCDC171-209ENST00000498725 DRG2P55039 364 aaKnown RBP8.97□□□□□ -0.97
CCDC171-209ENST00000498725 PDE1BQ01064 536 aa8.97□□□□□ -0.97
CCDC171-209ENST00000498725 DSC2Q02487 901 aa8.97□□□□□ -0.97
CCDC171-209ENST00000498725 DPYSQ14117 519 aa8.97□□□□□ -0.97
CCDC171-209ENST00000498725 GPR18Q14330 331 aa8.97□□□□□ -0.97
CCDC171-209ENST00000498725 SMTNL2Q2TAL5 461 aa8.97□□□□□ -0.97
CCDC171-209ENST00000498725 DPCR1Q3MIW9 517 aa8.97□□□□□ -0.97
CCDC171-209ENST00000498725 TCP11X2Q5H9J9 407 aa8.97□□□□□ -0.97
CCDC171-209ENST00000498725 ALS2CLQ60I27 953 aa8.97□□□□□ -0.97
CCDC171-209ENST00000498725 TMCO3Q6UWJ1 677 aa8.97□□□□□ -0.97
CCDC171-209ENST00000498725 SYVN1Q86TM6 617 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms