RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 PRR35P0CG20 571 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 MAGEA11P43364 429 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 DIO3P55073 304 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 LCP2Q13094 533 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ZNF235Q14590 738 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 FBXO48Q5FWF7 155 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 CLLU1OSQ5K130 101 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 INTS11Q5TA45 600 aaKnown RBP15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ALG1LQ6GMV1 187 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ANKRD33Q7Z3H0 272 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 COLGALT2Q8IYK4 626 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 FBXO32Q969P5 355 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TRIM8Q9BZR9 551 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 DERL2Q9GZP9 239 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 AGPAT4Q9NRZ5 378 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ACTR3BQ9P1U1 418 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 PCDHB5Q9Y5E4 795 aa15.98■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ZFC3H1O60293 1989 aaKnown RBP15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 FAM149AA5PLN7 773 aa15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ASPDHA6ND91 283 aa15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TMEM189-UBE2V1I3L0A0 370 aa15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ECI2O75521 394 aa15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 RPS17P08708 135 aaKnown RBP15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 CLTBP09497 229 aa15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 CSF2RAP15509 400 aa15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 MAPKAPK2P49137 400 aa15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ZNF140P52738 457 aaPredicted RBP15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 BNIP2Q12982 314 aa15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 COQ5Q5HYK3 327 aa15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 C10orf120Q5SQS8 335 aa15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 KRT80Q6KB66 452 aa15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 UBE2Q1Q7Z7E8 422 aa15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ADGRG5Q8IZF4 528 aa15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 CBR4Q8N4T8 237 aa15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 PACRGLQ8N7B6 248 aa15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TRIML2Q8N7C3 387 aa15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 STAG3L4Q8TBR4 150 aa15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TMEM125Q96AQ2 219 aa15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 RMND5BQ96G75 393 aaPredicted RBP15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TEX37Q96LM6 180 aa15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 SEMA4BQ9NPR2 832 aaPredicted RBP15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 INTS10Q9NVR2 710 aaKnown RBP15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 NLE1Q9NVX2 485 aaPredicted RBP15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 GALPQ9UBC7 116 aa15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ZNF225Q9UK10 706 aa15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 AURKCQ9UQB9 309 aa15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 CROCCQ5TZA2 2017 aa15.97■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 SUPT3HB4E1H0 165 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 SUPT3HO75486 399 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 RHOBTB1O94844 696 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 NDST3O95803 873 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 RPL10P27635 214 aaKnown RBP15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 PRDX3P30048 256 aaKnown RBP15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 OXTRP30559 389 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 FMO4P31512 558 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TAF10Q12962 218 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 FAM26DQ5JW98 314 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 VARS2Q5ST30 1063 aaKnown RBP15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 OGFOD2Q6N063 350 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 CMTR2Q8IYT2 770 aaKnown RBP15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 FBXO39Q8N4B4 442 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 FAM47BQ8NA70 645 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 GOLM1Q8NBJ4 401 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 DBF4BQ8NFT6 615 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 HM13Q8TCT9 377 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 MYRFLQ96LU7 910 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 SYTL2Q9HCH5 934 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 SMOXQ9NWM0 555 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 GID8Q9NWU2 228 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 RNF112Q9ULX5 631 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 FAM50BQ9Y247 325 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 PRG3Q9Y2Y8 225 aaPredicted RBP15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TIMM22Q9Y584 194 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 A0A0D9SEW6 157 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 UBA6A0AVT1 1052 aaPredicted RBP15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 LCHNA4D1U4 455 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 CDC7O00311 574 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ARPC2O15144 300 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TPD52L2O43399 206 aaKnown RBP15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 GNAO1P09471 354 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 IDO1P14902 403 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 HOXD9P28356 352 aaPredicted RBP15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 OR1G1P47890 313 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 CDH15P55291 814 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TUBA4AP68366 448 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 FOXM1Q08050 763 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TSNQ15631 228 aaKnown RBP15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 ZNF599Q96NL3 588 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TRIM15Q9C019 465 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 OLA1Q9NTK5 396 aaKnown RBP15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 SLC8A2Q9UPR5 921 aa15.96■□□□□ 0.15
MSH5-SAPCD1-208ENST00000498473 TRIM64CA6NLI5 447 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 ACOX3O15254 700 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 TRMUO75648 421 aaKnown RBP15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SERPINF2P08697 491 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 SELPP16109 830 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 TACR2P21452 398 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 RGRP47804 291 aa15.95■□□□□ 0.14
MSH5-SAPCD1-208ENST00000498473 MRPL19P49406 292 aaKnown RBP15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms