RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 HECTD2Q5U5R9 776 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 KCTD16Q68DU8 428 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 KIAA0895LQ68EN5 471 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 FAM45BPQ6NSW5 357 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 SLC41A1Q8IVJ1 513 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 SRRM1Q8IYB3 904 aaKnown RBP11.29□□□□□ -0.6
MCF2L-231ENST00000494043 DENND6BQ8NEG7 585 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 GDAP1Q8TB36 358 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 FAM45AQ8TCE6 357 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 HEXDCQ8WVB3 486 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 CENPTQ96BT3 561 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 SERAC1Q96JX3 654 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 SPACA7Q96KW9 195 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 BIRC8Q96P09 236 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 LENG8Q96PV6 779 aaPredicted RBP11.29□□□□□ -0.6
MCF2L-231ENST00000494043 NDNQ99608 321 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 KLF6Q99612 283 aaPredicted RBP11.29□□□□□ -0.6
MCF2L-231ENST00000494043 AARSD1Q9BTE6 412 aaKnown RBP11.29□□□□□ -0.6
MCF2L-231ENST00000494043 GPR174Q9BXC1 333 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 CCDC68Q9H2F9 335 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 C6orf106Q9H6K1 298 aaPredicted RBP11.29□□□□□ -0.6
MCF2L-231ENST00000494043 CAB39LQ9H9S4 337 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 MBNL1Q9NR56 388 aaKnown RBP11.29□□□□□ -0.6
MCF2L-231ENST00000494043 SNX15Q9NRS6 342 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 SENP1Q9P0U3 644 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 GNPTGQ9UJJ9 305 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 SLC39A10Q9ULF5 831 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 PCDHB1Q9Y5F3 818 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 ACTL7BQ9Y614 415 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 COMMD10Q9Y6G5 202 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 PLXNB3Q9ULL4 1909 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 CUL9Q8IWT3 2517 aa11.29□□□□□ -0.6
MCF2L-231ENST00000494043 CFAP99D6REC4 459 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 SLC31A1O15431 190 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 MTX2O75431 263 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 SLC25A14O95258 325 aaPredicted RBP11.28□□□□□ -0.6
MCF2L-231ENST00000494043 IGHV4-34P06331 123 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 RALBP11234 206 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 TDGF1P13385 188 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 PKMP14618 531 aaKnown RBP11.28□□□□□ -0.6
MCF2L-231ENST00000494043 MSH3P20585 1137 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 FDXRP22570 491 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 NUDT1P36639 197 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 CCNFP41002 786 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 CSRP3P50461 194 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 CDKN2DP55273 166 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 TAS2R39P59534 338 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 ZKSCAN8Q15776 578 aaPredicted RBP11.28□□□□□ -0.6
MCF2L-231ENST00000494043 KHDC1Q4VXA5 237 aaKnown RBP11.28□□□□□ -0.6
MCF2L-231ENST00000494043 USP39Q53GS9 565 aaKnown RBP11.28□□□□□ -0.6
MCF2L-231ENST00000494043 MACC1Q6ZN28 852 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 CMC1Q7Z7K0 106 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 EXOC3L1Q86VI1 746 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 HEATR4Q86WZ0 1026 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 FAM160A2Q8N612 972 aaPredicted RBP11.28□□□□□ -0.6
MCF2L-231ENST00000494043 FRMD1Q8N878 549 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 TMEM105Q8N8V8 129 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 ACMSDQ8TDX5 336 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 TSPAN17Q96FV3 270 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 DCUN1D1Q96GG9 259 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 COX14Q96I36 57 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 HIC2Q96JB3 615 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 OLFM1Q99784 485 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 PCED1AQ9H1Q7 454 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 WDR26Q9H7D7 661 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 FZD3Q9NPG1 666 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 FAM53CQ9NYF3 392 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 MBD1Q9UIS9 605 aaPredicted RBP11.28□□□□□ -0.6
MCF2L-231ENST00000494043 VWA7Q9Y334 891 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 PRSS21Q9Y6M0 314 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 TRPM6Q9BX84 2022 aa11.28□□□□□ -0.6
MCF2L-231ENST00000494043 MUC3AQ02505 3323 aa11.27□□□□□ -0.6
MCF2L-231ENST00000494043 CCDC163A0A0D9SF12 145 aa11.27□□□□□ -0.61
MCF2L-231ENST00000494043 H3BMM5 538 aa11.27□□□□□ -0.61
MCF2L-231ENST00000494043 LAMTOR5O43504 91 aa11.27□□□□□ -0.61
MCF2L-231ENST00000494043 NDUFS2O75306 463 aa11.27□□□□□ -0.61
MCF2L-231ENST00000494043 RHOBTB1O94844 696 aa11.27□□□□□ -0.61
MCF2L-231ENST00000494043 AP2A2O94973 939 aa11.27□□□□□ -0.61
MCF2L-231ENST00000494043 FSBPO95073 299 aa11.27□□□□□ -0.61
MCF2L-231ENST00000494043 PYGBP11216 843 aa11.27□□□□□ -0.61
MCF2L-231ENST00000494043 ATP1B2P14415 290 aaPredicted RBP11.27□□□□□ -0.61
MCF2L-231ENST00000494043 STMN1P16949 149 aa11.27□□□□□ -0.61
MCF2L-231ENST00000494043 KRT4P19013 534 aa11.27□□□□□ -0.61
MCF2L-231ENST00000494043 SAT1P21673 171 aa11.27□□□□□ -0.61
MCF2L-231ENST00000494043 CD9P21926 228 aa11.27□□□□□ -0.61
MCF2L-231ENST00000494043 HNRNPA2B1P22626 353 aaKnown RBP11.27□□□□□ -0.61
MCF2L-231ENST00000494043 CRABP2P29373 138 aa11.27□□□□□ -0.61
MCF2L-231ENST00000494043 TYK2P29597 1187 aa11.27□□□□□ -0.61
MCF2L-231ENST00000494043 AKT2P31751 481 aa11.27□□□□□ -0.61
MCF2L-231ENST00000494043 TRIM23P36406 574 aa11.27□□□□□ -0.61
MCF2L-231ENST00000494043 SLC12A2P55011 1212 aa11.27□□□□□ -0.61
MCF2L-231ENST00000494043 RAB10P61026 200 aa11.27□□□□□ -0.61
MCF2L-231ENST00000494043 CDK3Q00526 305 aa11.27□□□□□ -0.61
MCF2L-231ENST00000494043 TIAL1Q01085 375 aaKnown RBP eCLIP11.27□□□□□ -0.61
MCF2L-231ENST00000494043 SLC18A2Q05940 514 aa11.27□□□□□ -0.61
MCF2L-231ENST00000494043 DMWDQ09019 674 aa11.27□□□□□ -0.61
MCF2L-231ENST00000494043 INPP5AQ14642 412 aa11.27□□□□□ -0.61
MCF2L-231ENST00000494043 ZNF648Q5T619 568 aaPredicted RBP11.27□□□□□ -0.61
MCF2L-231ENST00000494043 PTRHD1Q6GMV3 140 aaKnown RBP11.27□□□□□ -0.61
MCF2L-231ENST00000494043 SH2D5Q6ZV89 423 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms