RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 PIRTP0C851 137 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 KDELR1P24390 212 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 STAT5AP42229 794 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 UBASH3AP57075 661 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 DCDC1P59894 354 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 IFI35P80217 286 aaPredicted RBP12.23□□□□□ -0.45
CPSF3-204ENST00000489403 COLEC12Q5KU26 742 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 ATP1A1-AS1Q5TC04 95 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 CRTC3Q6UUV7 619 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 KDELC2Q7Z4H8 507 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 ADGRG6Q86SQ4 1221 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 LUZP1Q86V48 1076 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 PLXDC1Q8IUK5 500 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 PLD5Q8N7P1 536 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 AVL9Q8NBF6 648 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 RAPGEF5Q92565 580 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 C9orf72Q96LT7 481 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 RNF157Q96PX1 679 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 TRIB3Q96RU7 358 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 PACSIN1Q9BY11 444 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 ADGRE3Q9BY15 652 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 CEP41Q9BYV8 373 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 BRD8Q9H0E9 1235 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 TRIT1Q9H3H1 467 aaKnown RBP12.23□□□□□ -0.45
CPSF3-204ENST00000489403 UCK1Q9HA47 277 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 ZFYVE1Q9HBF4 777 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 CBX8Q9HC52 389 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 TRIM39Q9HCM9 518 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 UVRAGQ9P2Y5 699 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 SLC23A2Q9UGH3 650 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 SHOC2Q9UQ13 582 aa12.23□□□□□ -0.45
CPSF3-204ENST00000489403 MRPS18BQ9Y676 258 aaKnown RBP12.23□□□□□ -0.45
CPSF3-204ENST00000489403 TLN1Q9Y490 2541 aaKnown RBP12.22□□□□□ -0.45
CPSF3-204ENST00000489403 CHUKO15111 745 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 MTX2O75431 263 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 MTA2O94776 668 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 SLC4A1P02730 911 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 H2AFZP0C0S5 128 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 ZNF28P17035 718 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 TYRP1P17643 537 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 XRCC1P18887 633 aaPredicted RBP12.22□□□□□ -0.45
CPSF3-204ENST00000489403 F8A1P23610 371 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 CASRP41180 1078 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 SLC19A1P41440 591 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 MAP7Q14244 749 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 SEPT7Q16181 437 aaKnown RBP12.22□□□□□ -0.45
CPSF3-204ENST00000489403 INSCQ1MX18 579 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 DEFB109BQ30KR1 87 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 ZFYVE27Q5T4F4 411 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 TMEM26Q6ZUK4 368 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 H2AFVQ71UI9 128 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 TMC3Q7Z5M5 1100 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 TRAM1L1Q8N609 369 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 ESX1Q8N693 406 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 C9orf43Q8TAL5 461 aaPredicted RBP12.22□□□□□ -0.45
CPSF3-204ENST00000489403 APOBEC4Q8WW27 367 aaKnown RBP12.22□□□□□ -0.45
CPSF3-204ENST00000489403 GLYATL1Q969I3 302 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 IQCDQ96DY2 449 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 RNF31Q96EP0 1072 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 ZNF830Q96NB3 372 aaPredicted RBP12.22□□□□□ -0.45
CPSF3-204ENST00000489403 ZSCAN5AQ9BUG6 496 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 ZNF71Q9NQZ8 489 aaPredicted RBP12.22□□□□□ -0.45
CPSF3-204ENST00000489403 ZNF624Q9P2J8 865 aaPredicted RBP12.22□□□□□ -0.45
CPSF3-204ENST00000489403 NFKBIL1Q9UBC1 381 aaPredicted RBP12.22□□□□□ -0.45
CPSF3-204ENST00000489403 ANAPC2Q9UJX6 822 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 LUC7L2Q9Y383 392 aaKnown RBP12.22□□□□□ -0.45
CPSF3-204ENST00000489403 ZNF711Q9Y462 761 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 SLC30A1Q9Y6M5 507 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 RPS6KL1Q9Y6S9 549 aa12.22□□□□□ -0.45
CPSF3-204ENST00000489403 PRR19A6NJB7 356 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 GPR89AB7ZAQ6 455 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 KMOO15229 486 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 UBXN7O94888 489 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 VIPP01282 170 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 GPR89BP0CG08 455 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 BRAFP15056 766 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 BPIP17213 487 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 TCN2P20062 427 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 LEPRP48357 1165 aaKnown RBP12.21□□□□□ -0.45
CPSF3-204ENST00000489403 TPM4P67936 248 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 SH3BP2P78314 561 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 MC1RQ01726 317 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 SRSF1Q07955 248 aaKnown RBP eCLIP12.21□□□□□ -0.45
CPSF3-204ENST00000489403 FOXM1Q08050 763 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 AP1B1Q10567 949 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 PCSK7Q16549 785 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 KHDC1Q4VXA5 237 aaKnown RBP12.21□□□□□ -0.45
CPSF3-204ENST00000489403 CRTC2Q53ET0 693 aaPredicted RBP12.21□□□□□ -0.45
CPSF3-204ENST00000489403 PDPK2PQ6A1A2 396 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 SLC9A4Q6AI14 798 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 C16orf46Q6P387 395 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 NPNTQ6UXI9 565 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 LRRTM4Q86VH4 590 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 ZNF547Q8IVP9 402 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 TRIM48Q8IWZ4 208 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 CTNNBL1Q8WYA6 563 aaPredicted RBP12.21□□□□□ -0.45
CPSF3-204ENST00000489403 TADA1Q96BN2 335 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 IMP4Q96G21 291 aaKnown RBP12.21□□□□□ -0.45
CPSF3-204ENST00000489403 ABHD17AQ96GS6 310 aa12.21□□□□□ -0.45
CPSF3-204ENST00000489403 TGM7Q96PF1 710 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms