RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 HIST1H2ACQ93077 130 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 ZNF510Q9Y2H8 683 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 FPGTO14772 594 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 EGFLAMQ63HQ2 1017 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 COLGALT2Q8IYK4 626 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 SLC34A3Q8N130 599 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 AHI1Q8N157 1196 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 SNX27Q96L92 541 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 ZNF222Q9UK12 451 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 ING4Q9UNL4 249 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 DGKBQ9Y6T7 804 aa16.34■□□□□ 0.21
COL7A1-210ENST00000487017 CERS6Q6ZMG9 384 aa16.33■□□□□ 0.21
COL7A1-210ENST00000487017 TIFAQ96CG3 184 aa16.33■□□□□ 0.21
COL7A1-210ENST00000487017 TMEM59LQ9UK28 342 aa16.33■□□□□ 0.21
COL7A1-210ENST00000487017 UBE2QL1A1L167 161 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 PLK4O00444 970 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 STK16O75716 305 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 CLDN9O95484 217 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 CHRNGP07510 517 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 GLUD2P49448 558 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 DENND6AQ8IWF6 608 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 SLC35B2Q8TB61 432 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 XPNPEP1Q9NQW7 623 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 EURLQ9NYK6 297 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 TEX28O15482 410 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 SCELO95171 688 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 METTL18O95568 372 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 IFNA16P05015 189 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 MANFP55145 182 aaKnown RBP16.33■□□□□ 0.2
COL7A1-210ENST00000487017 RAVER1Q8IY67 606 aaKnown RBP16.33■□□□□ 0.2
COL7A1-210ENST00000487017 EBF4Q9BQW3 602 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 RMI1Q9H9A7 625 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 DTLQ9NZJ0 730 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 ASF1AQ9Y294 204 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 MSCO60682 206 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 UGT2B17O75795 530 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 ANGPTL1O95841 491 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 ACLYP53396 1101 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 ARF5P84085 180 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 CAPN13Q6MZZ7 669 aaPredicted RBP16.33■□□□□ 0.2
COL7A1-210ENST00000487017 LBX2Q6XYB7 198 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 UNC5BQ8IZJ1 945 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 TRIM39Q9HCM9 518 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 PTTG2Q9NZH5 202 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 RAB23Q9ULC3 237 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 MON2Q7Z3U7 1717 aa16.33■□□□□ 0.2
COL7A1-210ENST00000487017 MT-CYBP00156 380 aaPredicted RBP16.32■□□□□ 0.2
COL7A1-210ENST00000487017 TACR2P21452 398 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 AQP1P29972 269 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 THOP1P52888 689 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 NOL9Q5SY16 702 aaKnown RBP16.32■□□□□ 0.2
COL7A1-210ENST00000487017 TAC4Q86UU9 113 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 DCAKDQ8WVC6 231 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 EMID1Q96A84 441 aaPredicted RBP16.32■□□□□ 0.2
COL7A1-210ENST00000487017 M0R2N6 131 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 PIP5K1BO14986 540 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 RPL4P36578 427 aaKnown RBP16.32■□□□□ 0.2
COL7A1-210ENST00000487017 ASMTP46597 345 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 ZNF460Q14592 562 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 CCNYL2Q5T2Q4 361 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 FAM131AQ6UXB0 335 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 COX4I2Q96KJ9 171 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 CXorf21Q9HAI6 301 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 URADA6NGE7 173 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 UGT1A9O60656 530 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 GOT2P00505 430 aaKnown RBP16.32■□□□□ 0.2
COL7A1-210ENST00000487017 TAS2R41P59536 307 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 ACTR3P61158 418 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 GTF2H2Q13888 395 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 CA9Q16790 459 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 GTF2H2CQ6P1K8 395 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 PNPT1Q8TCS8 783 aaKnown RBP16.32■□□□□ 0.2
COL7A1-210ENST00000487017 UGT1A7Q9HAW7 530 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 UGT1A10Q9HAW8 530 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 UGT1A8Q9HAW9 530 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 SH3GLB1Q9Y371 365 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 H0Y858 1186 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 MT-ND1P03886 318 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 OR4Q2P0C623 313 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 POU5F1Q01860 360 aaKnown RBP16.32■□□□□ 0.2
COL7A1-210ENST00000487017 SVOPLQ8N434 492 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 FAM156AQ8NDB6 213 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 DNAJB4Q9UDY4 337 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 C9JVG2 144 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 ELFN1P0C7U0 828 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 SLC18A1P54219 525 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 PTPN5P54829 565 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 DUSP4Q13115 394 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 SERPINA13PQ6UXR4 307 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 PIK3C3Q8NEB9 887 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 AASDHPPTQ9NRN7 309 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 FBXW11Q9UKB1 542 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 GPSM3Q9Y4H4 160 aa16.32■□□□□ 0.2
COL7A1-210ENST00000487017 SLC35G4P0C7Q5 338 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 SPAM1P38567 509 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 NDST2P52849 883 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 RGS1Q08116 209 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 DPYSL2Q16555 572 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 PTF1AQ7RTS3 328 aa16.31■□□□□ 0.2
COL7A1-210ENST00000487017 COQ10BQ9H8M1 238 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms