RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 ATP5OP48047 213 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 MARCKSL1P49006 195 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 PDX1P52945 283 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 GEMP55040 296 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 NAP1L1P55209 391 aaKnown RBP6.93□□□□□ -1.3
VPS50-218ENST00000485994 GPLD1P80108 840 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 PDE1BQ01064 536 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 OTUD4Q01804 1114 aaKnown RBP6.93□□□□□ -1.3
VPS50-218ENST00000485994 KLF1Q13351 362 aaPredicted RBP6.93□□□□□ -1.3
VPS50-218ENST00000485994 KIR2DS5Q14953 304 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 ANKRD20A2Q5SQ80 823 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 CHCHD2P9Q5T1J5 151 aaPredicted RBP6.93□□□□□ -1.3
VPS50-218ENST00000485994 ANKRD20A1Q5TYW2 823 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 ANKRD20A3Q5VUR7 823 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 PEX26Q7Z412 305 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 SPRED1Q7Z699 444 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 ADGRG6Q86SQ4 1221 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 PIM3Q86V86 326 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 GALNT13Q8IUC8 556 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 CCNJLQ8IV13 435 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 CCDC50Q8IVM0 306 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 SLITRK4Q8IW52 837 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 TTC30BQ8N4P2 665 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.93□□□□□ -1.3
VPS50-218ENST00000485994 ZSCAN1Q8NBB4 408 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 ZNF248Q8NDW4 579 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 ACRBPQ8NEB7 543 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 SNRNP27Q8WVK2 155 aaKnown RBP6.93□□□□□ -1.3
VPS50-218ENST00000485994 GLYATL1Q969I3 302 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 SH3KBP1Q96B97 665 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 ATXN7L3BQ96GX2 97 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 OXNAD1Q96HP4 312 aaPredicted RBP6.93□□□□□ -1.3
VPS50-218ENST00000485994 HERPUD2Q9BSE4 406 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 SPATA16Q9BXB7 569 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 HEMGNQ9BXL5 484 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 CEP41Q9BYV8 373 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 FRMD8P1Q9BZ68 369 aaPredicted RBP6.93□□□□□ -1.3
VPS50-218ENST00000485994 STRADBQ9C0K7 418 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 UCK1Q9HA47 277 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 SARS2Q9NP81 518 aaKnown RBP6.93□□□□□ -1.3
VPS50-218ENST00000485994 IL26Q9NPH9 171 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 THSD1Q9NS62 852 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 KLHL8Q9P2G9 620 aaPredicted RBP6.93□□□□□ -1.3
VPS50-218ENST00000485994 FEZ2Q9UHY8 353 aaPredicted RBP6.93□□□□□ -1.3
VPS50-218ENST00000485994 ZNF711Q9Y462 761 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 OAS3Q9Y6K5 1087 aaKnown RBP6.93□□□□□ -1.3
VPS50-218ENST00000485994 RNF215Q9Y6U7 377 aa6.93□□□□□ -1.3
VPS50-218ENST00000485994 ITPR1Q14643 2758 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 IGSF10Q6WRI0 2623 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 MGAQ8IWI9 3026 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 A6NCN8 305 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 GOLGA6CA6NDK9 693 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 GOLGA6BA6NDN3 693 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 GOLGA6L9A6NEM1 432 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 C2orf81A6NN90 581 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 RHPN2P1A8MT19 583 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 PLD2O14939 933 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 HGSO14964 777 aaPredicted RBP6.92□□□□□ -1.3
VPS50-218ENST00000485994 KMOO15229 486 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 INPP4BO15327 924 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 ARHGAP6O43182 974 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 PSMD3O43242 534 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 KRT86O43790 486 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 STK10O94804 968 aaKnown RBP6.92□□□□□ -1.3
VPS50-218ENST00000485994 ASMTLO95671 621 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 CPNE6O95741 557 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 ATP1A1P05023 1023 aaKnown RBP6.92□□□□□ -1.3
VPS50-218ENST00000485994 MPOP05164 745 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 RPLP0P05388 317 aaKnown RBP6.92□□□□□ -1.3
VPS50-218ENST00000485994 ITGA2BP08514 1039 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 GOLGA6DP0CG33 693 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 ZNF8P17098 575 aaPredicted RBP6.92□□□□□ -1.3
VPS50-218ENST00000485994 PSMA3P25788 255 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 RBMS1P29558 406 aaKnown RBP6.92□□□□□ -1.3
VPS50-218ENST00000485994 ACTR1BP42025 376 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 TNNT3P45378 269 aaPredicted RBP6.92□□□□□ -1.3
VPS50-218ENST00000485994 EPHA4P54764 986 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 UCNP55089 124 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 INHBCP55103 352 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 PCBP4P57723 403 aaKnown RBP6.92□□□□□ -1.3
VPS50-218ENST00000485994 EIF3EP60228 445 aaKnown RBP6.92□□□□□ -1.3
VPS50-218ENST00000485994 ACTR1AP61163 376 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 GABREP78334 506 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 TMEM115Q12893 351 aaPredicted RBP6.92□□□□□ -1.3
VPS50-218ENST00000485994 ITGA9Q13797 1035 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 GALNT3Q14435 633 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 TAF1AQ15573 450 aaPredicted RBP6.92□□□□□ -1.3
VPS50-218ENST00000485994 PCSK7Q16549 785 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 PARP6Q2NL67 630 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 SIRPB2Q5JXA9 342 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 ZNF569Q5MCW4 686 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 LDLRAP1Q5SW96 308 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 KCTD11Q693B1 232 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 DARS2Q6PI48 645 aaKnown RBP6.92□□□□□ -1.3
VPS50-218ENST00000485994 BRICD5Q6PL45 260 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 ABRAXAS1Q6UWZ7 409 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 ZNF574Q6ZN55 896 aaPredicted RBP6.92□□□□□ -1.3
VPS50-218ENST00000485994 B4GALNT4Q76KP1 1039 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 RAB11FIP2Q7L804 512 aa6.92□□□□□ -1.3
VPS50-218ENST00000485994 KDELC2Q7Z4H8 507 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms