RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 WDSUB1Q8N9V3 476 aa3.68□□□□□ -1.82
VPS41-213ENST00000485955 HM13Q8TCT9 377 aa3.68□□□□□ -1.82
VPS41-213ENST00000485955 FCAMRQ8WWV6 532 aa3.68□□□□□ -1.82
VPS41-213ENST00000485955 SCRN2Q96FV2 425 aa3.68□□□□□ -1.82
VPS41-213ENST00000485955 ZNF354BQ96LW1 612 aa3.68□□□□□ -1.82
VPS41-213ENST00000485955 TBATAQ96M53 351 aa3.68□□□□□ -1.82
VPS41-213ENST00000485955 PIGMQ9H3S5 423 aa3.68□□□□□ -1.82
VPS41-213ENST00000485955 TFB2MQ9H5Q4 396 aaKnown RBP3.68□□□□□ -1.82
VPS41-213ENST00000485955 MAU2Q9Y6X3 613 aa3.68□□□□□ -1.82
VPS41-213ENST00000485955 BAG4O95429 457 aaKnown RBP3.67□□□□□ -1.82
VPS41-213ENST00000485955 SERPINB2P05120 415 aa3.67□□□□□ -1.82
VPS41-213ENST00000485955 ICAM1P05362 532 aa3.67□□□□□ -1.82
VPS41-213ENST00000485955 SPARCP09486 303 aa3.67□□□□□ -1.82
VPS41-213ENST00000485955 AHRP35869 848 aa3.67□□□□□ -1.82
VPS41-213ENST00000485955 KRTAP10-12P60413 245 aa3.67□□□□□ -1.82
VPS41-213ENST00000485955 CCDC6Q16204 474 aa3.67□□□□□ -1.82
VPS41-213ENST00000485955 DPCR1Q3MIW9 517 aa3.67□□□□□ -1.82
VPS41-213ENST00000485955 ZNF805Q5CZA5 627 aa3.67□□□□□ -1.82
VPS41-213ENST00000485955 CYP20A1Q6UW02 462 aa3.67□□□□□ -1.82
VPS41-213ENST00000485955 PLXDC2Q6UX71 529 aa3.67□□□□□ -1.82
VPS41-213ENST00000485955 ANO5Q75V66 913 aa3.67□□□□□ -1.82
VPS41-213ENST00000485955 SDCCAG8Q86SQ7 713 aaPredicted RBP3.67□□□□□ -1.82
VPS41-213ENST00000485955 KRTAP7-1Q8IUC3 87 aa3.67□□□□□ -1.82
VPS41-213ENST00000485955 RASGEF1CQ8N431 466 aa3.67□□□□□ -1.82
VPS41-213ENST00000485955 IL17REQ8NFR9 667 aa3.67□□□□□ -1.82
VPS41-213ENST00000485955 OR1J2Q8NGS2 313 aa3.67□□□□□ -1.82
VPS41-213ENST00000485955 TAS1R2Q8TE23 839 aa3.67□□□□□ -1.82
VPS41-213ENST00000485955 UTP15Q8TED0 518 aaKnown RBP3.67□□□□□ -1.82
VPS41-213ENST00000485955 SMARCE1Q969G3 411 aa3.67□□□□□ -1.82
VPS41-213ENST00000485955 ARHGEF26Q96DR7 871 aa3.67□□□□□ -1.82
VPS41-213ENST00000485955 EGLN2Q96KS0 407 aa3.67□□□□□ -1.82
VPS41-213ENST00000485955 GFRA4Q9GZZ7 299 aa3.67□□□□□ -1.82
VPS41-213ENST00000485955 PDZD7Q9H5P4 517 aa3.67□□□□□ -1.82
VPS41-213ENST00000485955 JMJD4Q9H9V9 463 aa3.67□□□□□ -1.82
VPS41-213ENST00000485955 UPF2Q9HAU5 1272 aaKnown RBP3.67□□□□□ -1.82
VPS41-213ENST00000485955 MAP3K20Q9NYL2 800 aaKnown RBP3.67□□□□□ -1.82
VPS41-213ENST00000485955 ARHGEF11O15085 1522 aa3.66□□□□□ -1.82
VPS41-213ENST00000485955 SMIM1B2RUZ4 78 aa3.66□□□□□ -1.82
VPS41-213ENST00000485955 TMEM178BH3BS89 294 aa3.66□□□□□ -1.82
VPS41-213ENST00000485955 CSTF3Q12996 717 aaKnown RBP3.66□□□□□ -1.82
VPS41-213ENST00000485955 PNLIPRP3Q17RR3 467 aa3.66□□□□□ -1.82
VPS41-213ENST00000485955 ZNF876PQ49A33 203 aa3.66□□□□□ -1.82
VPS41-213ENST00000485955 ARHGAP11AQ6P4F7 1023 aa3.66□□□□□ -1.82
VPS41-213ENST00000485955 DIS3L2Q8IYB7 885 aaKnown RBP3.66□□□□□ -1.82
VPS41-213ENST00000485955 TRIM58Q8NG06 486 aa3.66□□□□□ -1.82
VPS41-213ENST00000485955 CTCFLQ8NI51 663 aaPredicted RBP3.66□□□□□ -1.82
VPS41-213ENST00000485955 PHF21AQ96BD5 680 aa3.66□□□□□ -1.82
VPS41-213ENST00000485955 FAM149B1Q96BN6 582 aa3.66□□□□□ -1.82
VPS41-213ENST00000485955 STAMBPL1Q96FJ0 436 aa3.66□□□□□ -1.82
VPS41-213ENST00000485955 PSMD1Q99460 953 aa3.66□□□□□ -1.82
VPS41-213ENST00000485955 RBM4Q9BWF3 364 aaKnown RBP3.66□□□□□ -1.82
VPS41-213ENST00000485955 TRPC7Q9HCX4 862 aa3.66□□□□□ -1.82
VPS41-213ENST00000485955 MTMR10Q9NXD2 777 aa3.66□□□□□ -1.82
VPS41-213ENST00000485955 STK39Q9UEW8 545 aa3.66□□□□□ -1.82
VPS41-213ENST00000485955 NESP48681 1621 aa3.66□□□□□ -1.82
VPS41-213ENST00000485955 FAM237BA0A1B0GVD1 139 aa3.65□□□□□ -1.83
VPS41-213ENST00000485955 EIF4E1BA6NMX2 242 aaKnown RBP3.65□□□□□ -1.83
VPS41-213ENST00000485955 PLPP2O43688 288 aa3.65□□□□□ -1.83
VPS41-213ENST00000485955 SLC25A12O75746 678 aa3.65□□□□□ -1.83
VPS41-213ENST00000485955 CSF2RAP15509 400 aa3.65□□□□□ -1.83
VPS41-213ENST00000485955 ALDH4A1P30038 563 aa3.65□□□□□ -1.83
VPS41-213ENST00000485955 PRCPP42785 496 aa3.65□□□□□ -1.83
VPS41-213ENST00000485955 CCR9P51686 369 aa3.65□□□□□ -1.83
VPS41-213ENST00000485955 FCN2Q15485 313 aa3.65□□□□□ -1.83
VPS41-213ENST00000485955 TBCEQ15813 527 aaPredicted RBP3.65□□□□□ -1.83
VPS41-213ENST00000485955 SFMBT2Q5VUG0 894 aa3.65□□□□□ -1.83
VPS41-213ENST00000485955 SEPT14Q6ZU15 432 aa3.65□□□□□ -1.83
VPS41-213ENST00000485955 PLEKHM3Q6ZWE6 761 aa3.65□□□□□ -1.83
VPS41-213ENST00000485955 STPG4Q8N801 248 aa3.65□□□□□ -1.83
VPS41-213ENST00000485955 DNAAF4Q8WXU2 420 aa3.65□□□□□ -1.83
VPS41-213ENST00000485955 RFFLQ8WZ73 363 aa3.65□□□□□ -1.83
VPS41-213ENST00000485955 TM9SF4Q92544 642 aa3.65□□□□□ -1.83
VPS41-213ENST00000485955 ZKSCAN4Q969J2 545 aaPredicted RBP3.65□□□□□ -1.83
VPS41-213ENST00000485955 LGALS12Q96DT0 336 aa3.65□□□□□ -1.83
VPS41-213ENST00000485955 WBP1Q96G27 269 aa3.65□□□□□ -1.83
VPS41-213ENST00000485955 OXNAD1Q96HP4 312 aaPredicted RBP3.65□□□□□ -1.83
VPS41-213ENST00000485955 C17orf77Q96MU5 243 aa3.65□□□□□ -1.83
VPS41-213ENST00000485955 MAGIXQ9H6Y5 334 aa3.65□□□□□ -1.83
VPS41-213ENST00000485955 ZNF624Q9P2J8 865 aaPredicted RBP3.65□□□□□ -1.83
VPS41-213ENST00000485955 PGAP2Q9UHJ9 254 aa3.65□□□□□ -1.83
VPS41-213ENST00000485955 GTF2A1LQ9UNN4 478 aa3.65□□□□□ -1.83
VPS41-213ENST00000485955 R3HDM2Q9Y2K5 976 aaKnown RBP3.65□□□□□ -1.83
VPS41-213ENST00000485955 RUSC2Q8N2Y8 1516 aa3.65□□□□□ -1.83
VPS41-213ENST00000485955 BLOC1S5-TXNDC5H3BN57 136 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 H3BQ06 376 aaPredicted RBP3.64□□□□□ -1.83
VPS41-213ENST00000485955 CIDEAO60543 219 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 IPO7O95373 1038 aaKnown RBP3.64□□□□□ -1.83
VPS41-213ENST00000485955 INHBAP08476 426 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 CD48P09326 243 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 ZNF23P17027 643 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 VEGFCP49767 419 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 TAS2R40P59535 323 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 RPS3AP61247 264 aaKnown RBP3.64□□□□□ -1.83
VPS41-213ENST00000485955 MBTD1Q05BQ5 628 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 G3BP1Q13283 466 aaKnown RBP eCLIP3.64□□□□□ -1.83
VPS41-213ENST00000485955 ACVR2BQ13705 512 aa3.64□□□□□ -1.83
VPS41-213ENST00000485955 PDE1CQ14123 709 aaPredicted RBP3.64□□□□□ -1.83
VPS41-213ENST00000485955 TSTQ16762 297 aaKnown RBP3.64□□□□□ -1.83
VPS41-213ENST00000485955 SOWAHCQ53LP3 525 aaPredicted RBP3.64□□□□□ -1.83
VPS41-213ENST00000485955 RAB6CQ53S08 254 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms