RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 TSPY26PQ9H489 355 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 DEF6Q9H4E7 631 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 PCDH18Q9HCL0 1135 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 MBNL1Q9NR56 388 aaKnown RBP6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 ETNK2Q9NVF9 386 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 ZNHIT6Q9NWK9 470 aaKnown RBP6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 CTTNBP2NLQ9P2B4 639 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 UVRAGQ9P2Y5 699 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 NENFQ9UMX5 172 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 CLCA2Q9UQC9 943 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 COQ6Q9Y2Z9 468 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 CORINQ9Y5Q5 1042 aa6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 ZFC3H1O60293 1989 aaKnown RBP6.82□□□□□ -1.32
CCDC88A-213ENST00000476903 FAM208BQ5VWN6 2430 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 PKD1L2Q7Z442 2459 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 LY6G6EA0A0G2JKS1 128 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 SSU72P8A0A1W2PR75 194 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 TRAFD1O14545 582 aaPredicted RBP6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 MUSKO15146 869 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 HTRA2O43464 458 aaPredicted RBP6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 PRICKLE3O43900 615 aaPredicted RBP6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 MAFKO60675 156 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 SOCS5O75159 536 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 RASGRP1O95267 797 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 PEX11BO96011 259 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 PRKCGP05129 697 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 PCCBP05166 539 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 ANXA6P08133 673 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 KRT7P08729 469 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 ALPIP09923 528 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 H2AFZP0C0S5 128 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 CR2P20023 1033 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 GJC1P36383 396 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 MMP13P45452 471 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 BLKP51451 505 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 CLDN6P56747 220 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 RALGDSQ12967 914 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 MTM1Q13496 603 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 NFATC4Q14934 902 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 PDK2Q15119 407 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 ELOCQ15369 112 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 CDKN3Q16667 212 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 DEFB133Q30KQ1 61 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 MARC1Q5VT66 337 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 TIGD7Q6NT04 549 aaPredicted RBP6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 H2AFVQ71UI9 128 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 DPPA4Q7L190 304 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 MAP7D3Q8IWC1 876 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 RBFAQ8N0V3 343 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 FSTL5Q8N475 847 aaPredicted RBP6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 DCBLD1Q8N8Z6 715 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 KCTD6Q8NC69 237 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 FAM71BQ8TC56 605 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 IFI44Q8TCB0 444 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 DNAJC7Q99615 494 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 ZNF670Q9BS34 389 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 APOOQ9BUR5 198 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 LRRC61Q9BV99 259 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 ABCG4Q9H172 646 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 CAAP1Q9H8G2 361 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 HAUS2Q9NVX0 235 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 AK5Q9Y6K8 562 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 U3KQA8 63 aa6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 COL27A1Q8IZC6 1860 aaPredicted RBP6.81□□□□□ -1.32
CCDC88A-213ENST00000476903 KIF26BQ2KJY2 2108 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 DSPP15924 2871 aaKnown RBP6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 CELSR3Q9NYQ7 3312 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 UNC13CQ8NB66 2214 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 EME2A4GXA9 379 aaPredicted RBP6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 LMO7DNF2Z398 122 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 CACNB4O00305 520 aaPredicted RBP6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 MFSD11O43934 449 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 AKR1B10O60218 316 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 OPA1O60313 960 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 GCATO75600 419 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 RECQL5O94762 991 aaPredicted RBP6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 PROSCO94903 275 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 MT-CO3P00414 261 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 CPP00450 1065 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 CD48P09326 243 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 CYP2A6P11509 494 aaPredicted RBP6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 MYF5P13349 255 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 CTSEP14091 401 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 PNLIPP16233 465 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 TSHRP16473 764 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 IL4RP24394 825 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 MAN1A1P33908 653 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 GARSP41250 739 aaKnown RBP6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 ARSEP51690 589 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 HK3P52790 923 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 ADKP55263 362 aaKnown RBP6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 KIAA1024LP59773 190 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 ERVFRD-1P60508 538 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 SRP54P61011 504 aaKnown RBP6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 MAXP61244 160 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 SEMG2Q02383 582 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 GALNT2Q10471 571 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 C1orf61Q13536 156 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 DPYSL3Q14195 570 aa6.8□□□□□ -1.32
CCDC88A-213ENST00000476903 RTP5Q14D33 572 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms