RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 DOK6Q6PKX4 331 aa7.89□□□□□ -1.15
USP54-211ENST00000474929 ISLR2Q6UXK2 745 aa7.89□□□□□ -1.15
USP54-211ENST00000474929 ADAMTSL4Q6UY14 1074 aa7.89□□□□□ -1.15
USP54-211ENST00000474929 Q6ZPB1 254 aaPredicted RBP7.89□□□□□ -1.15
USP54-211ENST00000474929 FAM92BQ6ZTR7 304 aa7.89□□□□□ -1.15
USP54-211ENST00000474929 ZNF354CQ86Y25 554 aa7.89□□□□□ -1.15
USP54-211ENST00000474929 CLYBLQ8N0X4 340 aa7.89□□□□□ -1.15
USP54-211ENST00000474929 PDILTQ8N807 584 aa7.89□□□□□ -1.15
USP54-211ENST00000474929 IQUBQ8NA54 791 aa7.89□□□□□ -1.15
USP54-211ENST00000474929 WFDC11Q8NEX6 87 aa7.89□□□□□ -1.15
USP54-211ENST00000474929 ASB5Q8WWX0 329 aa7.89□□□□□ -1.15
USP54-211ENST00000474929 TFAP2BQ92481 460 aa7.89□□□□□ -1.15
USP54-211ENST00000474929 SEMA4DQ92854 862 aa7.89□□□□□ -1.15
USP54-211ENST00000474929 PGAP3Q96FM1 320 aaPredicted RBP7.89□□□□□ -1.15
USP54-211ENST00000474929 DTD2Q96FN9 168 aa7.89□□□□□ -1.15
USP54-211ENST00000474929 COX4I2Q96KJ9 171 aa7.89□□□□□ -1.15
USP54-211ENST00000474929 COQ10AQ96MF6 247 aa7.89□□□□□ -1.15
USP54-211ENST00000474929 NDC1Q9BTX1 674 aa7.89□□□□□ -1.15
USP54-211ENST00000474929 KCTD10Q9H3F6 313 aa7.89□□□□□ -1.15
USP54-211ENST00000474929 ZBTB20Q9HC78 741 aaPredicted RBP7.89□□□□□ -1.15
USP54-211ENST00000474929 PLCB1Q9NQ66 1216 aa7.89□□□□□ -1.15
USP54-211ENST00000474929 GOLGA6AQ9NYA3 693 aa7.89□□□□□ -1.15
USP54-211ENST00000474929 TBC1D29Q9UFV1 150 aa7.89□□□□□ -1.15
USP54-211ENST00000474929 GPN3Q9UHW5 284 aaPredicted RBP7.89□□□□□ -1.15
USP54-211ENST00000474929 TRAF3IP3Q9Y228 551 aa7.89□□□□□ -1.15
USP54-211ENST00000474929 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.89□□□□□ -1.15
USP54-211ENST00000474929 TLN2Q9Y4G6 2542 aa7.89□□□□□ -1.15
USP54-211ENST00000474929 AKAP6Q13023 2319 aa7.89□□□□□ -1.15
USP54-211ENST00000474929 NUP210LQ5VU65 1888 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 E9PLN8 166 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 ARHGEF9O43307 516 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 PROM1O43490 865 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 KDELR3O43731 214 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 PRAMEF2O60811 474 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 SRGAP2O75044 1071 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 ZRANB2O95218 330 aaKnown RBP eCLIP7.88□□□□□ -1.15
USP54-211ENST00000474929 RASAL1O95294 804 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 RAF1P04049 648 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 EBLN1P0CF75 366 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 MSX1P28360 303 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 ACVRL1P37023 503 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 PEX19P40855 299 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 GPR1P46091 355 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 MARSP56192 900 aaKnown RBP7.88□□□□□ -1.15
USP54-211ENST00000474929 ARG2P78540 354 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 MFAP5Q13361 173 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 C3AR1Q16581 482 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 DEFB113Q30KQ7 82 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 PAMR1Q6UXH9 720 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 NAPRTQ6XQN6 538 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 SPOCD1Q6ZMY3 1216 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 PAQR7Q86WK9 346 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 D2HGDHQ8N465 521 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 UBR7Q8N806 425 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 DNAAF3Q8N9W5 541 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 KIAA0895Q8NCT3 520 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 OR1N1Q8NGS0 311 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 GOT1L1Q8NHS2 421 aaPredicted RBP7.88□□□□□ -1.15
USP54-211ENST00000474929 SUN3Q8TAQ9 357 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 THAP3Q8WTV1 239 aaPredicted RBP7.88□□□□□ -1.15
USP54-211ENST00000474929 NRGNQ92686 78 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 SDCCAG3Q96C92 435 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 LMF1Q96S06 567 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 VKORC1Q9BQB6 163 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 LHPPQ9H008 270 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 NEUROD4Q9HD90 331 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 PIGVQ9NUD9 493 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 NDOR1Q9UHB4 597 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 TINAGQ9UJW2 476 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 PLEKHA6Q9Y2H5 1048 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 PCDHB4Q9Y5E5 795 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 ACTL7AQ9Y615 435 aa7.88□□□□□ -1.15
USP54-211ENST00000474929 FAM237BA0A1B0GVD1 139 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 INAFM1C9JVW0 142 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 MAP3K7O43318 606 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 LDB2O43679 373 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 KIF1CO43896 1103 aaKnown RBP7.87□□□□□ -1.15
USP54-211ENST00000474929 VEGFDO43915 354 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 SNX2O60749 519 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 CUTAO60888 179 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 MTA2O94776 668 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 ZBTB11O95625 1053 aaPredicted RBP7.87□□□□□ -1.15
USP54-211ENST00000474929 EML2O95834 649 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 CAPN1P07384 714 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 HOXD4P09016 255 aaPredicted RBP7.87□□□□□ -1.15
USP54-211ENST00000474929 CYP2A6P11509 494 aaPredicted RBP7.87□□□□□ -1.15
USP54-211ENST00000474929 PDIA4P13667 645 aaKnown RBP7.87□□□□□ -1.15
USP54-211ENST00000474929 RHOQP17081 205 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 GM2AP17900 193 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 CYP2A7P20853 494 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 HOXC12P31275 282 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 CSNK1DP48730 415 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 POLD2P49005 469 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 NASPP49321 788 aaPredicted RBP7.87□□□□□ -1.15
USP54-211ENST00000474929 CLCNKAP51800 687 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 DEUP1Q05D60 604 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 BCL2L1Q07817 233 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 PDCLQ13371 301 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 KRTCAP3Q53RY4 240 aa7.87□□□□□ -1.15
USP54-211ENST00000474929 SLC26A9Q7LBE3 791 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms