RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 CHMP24386 653 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 ICAM3P32942 547 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 EFNA5P52803 228 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 EEF1A1P68104 462 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 MRPS5P82675 430 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 NEXNQ0ZGT2 675 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 GAGE5Q13069 117 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 GAGE6Q13070 117 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 DCTN2Q13561 401 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 EEF1A1P5Q5VTE0 462 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 MZT2BQ6NZ67 158 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 KCTD18Q6PI47 426 aaPredicted RBP3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 RRM2BQ7LG56 351 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 CPLX4Q7Z7G2 160 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 PCGF5Q86SE9 256 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 SLC35F3Q8IY50 421 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 KIAA2013Q8IYS2 634 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 NGEFQ8N5V2 710 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 AMER3Q8N944 861 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 C11orf65Q8NCR3 313 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 SAAL1Q96ER3 474 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 LINC00479Q96M42 142 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 BARD1Q99728 777 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 GLIS2Q9BZE0 524 aaPredicted RBP3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 TRIM15Q9C019 465 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 RANBP17Q9H2T7 1088 aaKnown RBP3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 KRT84Q9NSB2 600 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 SNTG1Q9NSN8 517 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 TBC1D22BQ9NU19 505 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 C20orf141Q9NUB4 165 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 C2orf42Q9NWW7 574 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 TERF2IPQ9NYB0 399 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 CACNG5Q9UF02 275 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 RASAL2Q9UJF2 1139 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 RCOR1Q9UKL0 485 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 PIAS3Q9Y6X2 628 aa3.01□□□□□ -1.93
CCDC88A-212ENST00000474059 NDUFAF8A1L188 74 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 SPARCP09486 303 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 HSPA1AP0DMV8 641 aaKnown RBP3□□□□□ -1.93
CCDC88A-212ENST00000474059 HSPA1BP0DMV9 641 aaKnown RBP3□□□□□ -1.93
CCDC88A-212ENST00000474059 GATA1P15976 413 aaPredicted RBP3□□□□□ -1.93
CCDC88A-212ENST00000474059 GATA2P23769 480 aaPredicted RBP3□□□□□ -1.93
CCDC88A-212ENST00000474059 PSMA4P25789 261 aaKnown RBP3□□□□□ -1.93
CCDC88A-212ENST00000474059 MAPK4P31152 587 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 CPOXP36551 454 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 ARL1P40616 181 aaPredicted RBP3□□□□□ -1.93
CCDC88A-212ENST00000474059 CTCFP49711 727 aaPredicted RBP3□□□□□ -1.93
CCDC88A-212ENST00000474059 SETQ01105 290 aaPredicted RBP3□□□□□ -1.93
CCDC88A-212ENST00000474059 ZNF234Q14588 700 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 TAF11Q15544 211 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 KRT24Q2M2I5 525 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 C2orf68Q2NKX9 166 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 ZFP69Q49AA0 526 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 LCE1CQ5T751 118 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 LCE1BQ5T7P3 118 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 SERTAD4-AS1Q5TG53 156 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 SNX30Q5VWJ9 437 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 FAM171BQ6P995 826 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 GPAT4Q86UL3 456 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 ZCCHC9Q8N567 271 aaKnown RBP3□□□□□ -1.93
CCDC88A-212ENST00000474059 BMPERQ8N8U9 685 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 ETNPPLQ8TBG4 499 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 RHBDF1Q96CC6 855 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 FBXL8Q96CD0 374 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 PERPQ96FX8 193 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 PIP5K1AQ99755 562 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 VGLL1Q99990 258 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 BRF2Q9HAW0 419 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 CTNNAL1Q9UBT7 734 aa3□□□□□ -1.93
CCDC88A-212ENST00000474059 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3□□□□□ -1.93
CCDC88A-212ENST00000474059 IGLV5-45A0A087WSX0 123 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 TTC36A6NLP5 189 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 ARHGEF9O43307 516 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 DOK2O60496 412 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 ZBED4O75132 1171 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 PTP4A3O75365 173 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 SEC31AO94979 1220 aaKnown RBP2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 HEXAP06865 529 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 MMP2P08253 660 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 IRF1P10914 325 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 EIF3BP55884 814 aaKnown RBP2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 RPS3AP61247 264 aaKnown RBP2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 RPL7AP62424 266 aaKnown RBP2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 TMEM115Q12893 351 aaPredicted RBP2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 GRIK2Q13002 908 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 EIF4A2Q14240 407 aaKnown RBP2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 TCTN1Q2MV58 587 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 ZC2HC1CQ53FD0 456 aaPredicted RBP2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 TECRLQ5HYJ1 363 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 ITPRIPL1Q6GPH6 555 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 ZNF280DQ6N043 979 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 CFAP161Q6P656 301 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 FBXO46Q6PJ61 603 aaPredicted RBP2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 CPLX2Q6PUV4 134 aaKnown RBP2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 ANO5Q75V66 913 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 SLC46A3Q7Z3Q1 461 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 PXKQ7Z7A4 578 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 ADSSL1Q8N142 457 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 BEST2Q8NFU1 509 aa2.99□□□□□ -1.93
CCDC88A-212ENST00000474059 OR52I2Q8NH67 350 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms