RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 MED30Q96HR3 178 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 CDCA4Q9BXL8 241 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 KATNBL1Q9H079 304 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 ENTPD7Q9NQZ7 604 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 FBXO28Q9NVF7 368 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 GPRC5DQ9NZD1 345 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 PCSK1NQ9UHG2 260 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 NPTNQ9Y639 398 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 DHRS12A0PJE2 317 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 OR2A25A4D2G3 310 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 MAGEB3O15480 346 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 HMGA1P17096 107 aaKnown RBP5.32□□□□□ -1.56
SYNE1-220ENST00000471834 PRKCAP17252 672 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 CCNCP24863 283 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 HTR1BP28222 390 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 MLH1P40692 756 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 C21orf59P57076 290 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 TARDBPQ13148 414 aaKnown RBP eCLIP5.32□□□□□ -1.56
SYNE1-220ENST00000471834 GPR50Q13585 617 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 ITPRIPL1Q6GPH6 555 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.32□□□□□ -1.56
SYNE1-220ENST00000471834 DHRSXQ8N5I4 330 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 GTF3C2Q8WUA4 911 aaPredicted RBP5.32□□□□□ -1.56
SYNE1-220ENST00000471834 LIN28AQ9H9Z2 209 aaKnown RBP5.32□□□□□ -1.56
SYNE1-220ENST00000471834 IL37Q9NZH6 218 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 KLHL8Q9P2G9 620 aaPredicted RBP5.32□□□□□ -1.56
SYNE1-220ENST00000471834 XPR1Q9UBH6 696 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 PACSIN3Q9UKS6 424 aa5.32□□□□□ -1.56
SYNE1-220ENST00000471834 AGO1Q9UL18 857 aaKnown RBP5.32□□□□□ -1.56
SYNE1-220ENST00000471834 LOC285095A0A1B0GVY8 99 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 APOL1O14791 398 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 PIPP12273 146 aaPredicted RBP5.31□□□□□ -1.56
SYNE1-220ENST00000471834 GGT1P19440 569 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 OGNP20774 298 aaKnown RBP5.31□□□□□ -1.56
SYNE1-220ENST00000471834 BNIP3Q12983 259 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 PEX6Q13608 980 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 BOP1Q14137 746 aaKnown RBP5.31□□□□□ -1.56
SYNE1-220ENST00000471834 MAP1SQ66K74 1059 aaPredicted RBP5.31□□□□□ -1.56
SYNE1-220ENST00000471834 TIGD3Q6B0B8 471 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 FAM180AQ6UWF9 173 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 MRGPREQ86SM8 312 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 SCN4BQ8IWT1 228 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 ZMIZ2Q8NF64 920 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 ST6GAL2Q96JF0 529 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 ZBTB45Q96K62 511 aaPredicted RBP5.31□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF599Q96NL3 588 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 FUNDC2Q9BWH2 189 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 IRF2BPLQ9H1B7 796 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 IGFLR1Q9H665 355 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 HMG20AQ9NP66 347 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 MED9Q9NWA0 146 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 MYOCOSA0A1B0GUC4 107 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 ARRDC5A6NEK1 342 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 NDUFA2O43678 99 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 WBP4O75554 376 aaKnown RBP5.31□□□□□ -1.56
SYNE1-220ENST00000471834 HOXA9P31269 272 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 DCTP40126 519 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 KPNA2P52292 529 aaKnown RBP5.31□□□□□ -1.56
SYNE1-220ENST00000471834 SLC7A2P52569 658 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 HKDC1Q2TB90 917 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 UNC50Q53HI1 259 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF667Q5HYK9 610 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 PCID2Q5JVF3 399 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 C6orf52Q5T4I8 152 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 BROXQ5VW32 411 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 SLC46A3Q7Z3Q1 461 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 PIGZQ86VD9 579 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 TMEM199Q8N511 208 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 PBXIP1Q96AQ6 731 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF764Q96H86 408 aaPredicted RBP5.31□□□□□ -1.56
SYNE1-220ENST00000471834 FAM83CQ9BQN1 747 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 TDRD3Q9H7E2 651 aaKnown RBP5.31□□□□□ -1.56
SYNE1-220ENST00000471834 CYP4F11Q9HBI6 524 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 LATS2Q9NRM7 1088 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 ADA2Q9NZK5 511 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 CCL15-CCL14A0A0B4J2E2 113 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 MANSC4A6NHS7 340 aaPredicted RBP5.31□□□□□ -1.56
SYNE1-220ENST00000471834 HHLA1C9JL84 531 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 K7ERI5 159 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 AVPR1AP37288 418 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 CLCN4P51793 760 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 ESRRGP62508 458 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 CCL15Q16663 113 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 SOWAHAQ2M3V2 549 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 LRRC8EQ6NSJ5 796 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 Q6ZSR9 355 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 USP43Q70EL4 1123 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 C11orf74Q86VG3 221 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 VOPP1Q96AW1 172 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 TEX13BQ9BXU2 312 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 LRRC3Q9BY71 257 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 PTCH2Q9Y6C5 1203 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 ILVBLA1L0T0 632 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 E5RI56 91 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 PSMD3O43242 534 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 CALCAP01258 141 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 ZNF30P17039 623 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 GPX2P18283 190 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 CYP2F1P24903 491 aa5.31□□□□□ -1.56
SYNE1-220ENST00000471834 SP2Q02086 613 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms