RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 USP30Q70CQ3 517 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 MTSS1LQ765P7 747 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 CHST9Q7L1S5 443 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 ZNF572Q7Z3I7 529 aaPredicted RBP4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 KDELC2Q7Z4H8 507 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 NLRP14Q86W24 1093 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 VSIG1Q86XK7 387 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 ARHGAP12Q8IWW6 846 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 UNC5BQ8IZJ1 945 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 APCDD1Q8J025 514 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 RYBPQ8N488 228 aaPredicted RBP4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 ALLCQ8N6M5 410 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 GLIS1Q8NBF1 620 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 SMRP1Q8NCR6 262 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 MYRIPQ8NFW9 859 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 OR52K2Q8NGK3 314 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 MAFAQ8NHW3 353 aaPredicted RBP4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 SLC35B2Q8TB61 432 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 CCDC110Q8TBZ0 833 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 WFDC5Q8TCV5 224 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 CSGALNACT1Q8TDX6 532 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 HTR3CQ8WXA8 447 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 CASKIN2Q8WXE0 1202 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 SUSD6Q92537 303 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 ARHGEF2Q92974 986 aaKnown RBP4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 ELSPBP1Q96BH3 223 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 SLC7A6OSQ96CW6 309 aaPredicted RBP4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 ERLEC1Q96DZ1 483 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 P2RY11Q96G91 374 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 RUNDC3BQ96NL0 473 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 AGAP3Q96P47 875 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 XPO6Q96QU8 1125 aaKnown RBP4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 FERMT1Q9BQL6 677 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 TRMT61BQ9BVS5 477 aaKnown RBP4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 PHF7Q9BWX1 381 aaPredicted RBP4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 FRMD8P1Q9BZ68 369 aaPredicted RBP4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 BRD9Q9H8M2 597 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 ECT2Q9H8V3 914 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 PRDM16Q9HAZ2 1276 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 USP29Q9HBJ7 922 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 NT5MQ9NPB1 228 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 HPS4Q9NQG7 708 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 ABCB8Q9NUT2 735 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 DNAJC17Q9NVM6 304 aaKnown RBP4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 RBM22Q9NW64 420 aaKnown RBP eCLIP4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 MKS1Q9NXB0 559 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 DONSONQ9NYP3 566 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 GTSE1Q9NYZ3 720 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 KLHL8Q9P2G9 620 aaPredicted RBP4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 EVLQ9UI08 416 aaPredicted RBP4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 STOML2Q9UJZ1 356 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 NEU3Q9UQ49 428 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 INVSQ9Y283 1065 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 UTP11Q9Y3A2 253 aaKnown RBP4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 ATG2AQ2TAZ0 1938 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 ANAPC1Q9H1A4 1944 aa4.13□□□□□ -1.75
TMEM39A-204ENST00000468545 NOTCH4Q99466 2003 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 TRIOBPQ9H2D6 2365 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 ILVBLA1L0T0 632 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 CFAP69A5D8W1 941 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 TBC1D3BA6NDS4 549 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 ZSCAN5CA6NGD5 496 aaPredicted RBP4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 OTOL1A6NHN0 477 aaPredicted RBP4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 E7EVH7 732 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 GOLGA8MH3BSY2 632 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 K7ERQ8 282 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 RNF103O00237 685 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 MATN3O15232 486 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 CHADO15335 359 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 NCAM2O15394 837 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 KDELR3O43731 214 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 NARSO43776 548 aaKnown RBP4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 ECI2O75521 394 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 CNOT4O95628 575 aaKnown RBP4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 CCNB1P14635 433 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 HNRNPLP14866 589 aaKnown RBP eCLIP4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 POLR2EP19388 210 aaKnown RBP4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 PTPN3P26045 913 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 CARSP49589 748 aaKnown RBP4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 ITGA8P53708 1063 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 PLTPP55058 493 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 YBEYP58557 167 aaPredicted RBP4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 MAXP61244 160 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 BASP1P80723 227 aaKnown RBP4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 MEF2AQ02078 507 aaPredicted RBP4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 IL10RBQ08334 325 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 PPIDQ08752 370 aaKnown RBP4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 MGAT5Q09328 741 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 SLC10A7Q0GE19 358 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 WASHC5Q12768 1159 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 ZBTB17Q13105 803 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 CALCOCO2Q13137 446 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 HTR4Q13639 388 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 PTK6Q13882 451 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 DHX34Q14147 1143 aaKnown RBP4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 SPARCL1Q14515 664 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 PRPSAP1Q14558 356 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 ZNF235Q14590 738 aa4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 PRKD1Q15139 912 aaPredicted RBP4.12□□□□□ -1.75
TMEM39A-204ENST00000468545 CYTH1Q15438 398 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms