RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 NOL11Q9H8H0 719 aaKnown RBP8.87□□□□□ -0.99
SYNE1-217ENST00000466159 SLC52A3Q9NQ40 469 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 AFF4Q9UHB7 1163 aaKnown RBP8.87□□□□□ -0.99
SYNE1-217ENST00000466159 EGFL7Q9UHF1 273 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 EIF2B4Q9UI10 523 aaKnown RBP8.87□□□□□ -0.99
SYNE1-217ENST00000466159 NDUFAF1Q9Y375 327 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 PCDHB9Q9Y5E1 797 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 GPR45Q9Y5Y3 372 aa8.87□□□□□ -0.99
SYNE1-217ENST00000466159 E5RI56 91 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 STX16O14662 325 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 PQBP1O60828 265 aaKnown RBP8.86□□□□□ -0.99
SYNE1-217ENST00000466159 TBL1XO60907 577 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 TIPRLO75663 272 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 OR6B1O95007 311 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 MATN4O95460 622 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 ESRRBO95718 433 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 ALPIP09923 528 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 CES1P23141 567 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 GSTT1P30711 240 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 IRX1P78414 480 aaPredicted RBP8.86□□□□□ -0.99
SYNE1-217ENST00000466159 BLOC1S3Q6QNY0 202 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 DEFB128Q7Z7B8 93 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 GPSM1Q86YR5 675 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 GALNT15Q8N3T1 639 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 OR6K2Q8NGY2 324 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 OR2T11Q8NH01 316 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 WFDC5Q8TCV5 224 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 VPS33AQ96AX1 596 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 PPWD1Q96BP3 646 aaKnown RBP8.86□□□□□ -0.99
SYNE1-217ENST00000466159 PLEKHG4BQ96PX9 1271 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 CDK15Q96Q40 435 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 SLC29A1Q99808 456 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 CIB1Q99828 191 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 CMTM6Q9NX76 183 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 CD274Q9NZQ7 290 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 LHX3Q9UBR4 397 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 CNOT6Q9ULM6 557 aaKnown RBP8.86□□□□□ -0.99
SYNE1-217ENST00000466159 LZTS1Q9Y250 596 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 BACE2Q9Y5Z0 518 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 K7ERQ8 282 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 E2F3O00716 465 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 SNX2O60749 519 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 OR4F21O95013 312 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 CYBBP04839 570 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 PABPC4LP0CB38 370 aaKnown RBP8.86□□□□□ -0.99
SYNE1-217ENST00000466159 HSPA8P11142 646 aaKnown RBP8.86□□□□□ -0.99
SYNE1-217ENST00000466159 IDO1P14902 403 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 ETS2P15036 469 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 SLC6A2P23975 617 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 ZXDBP98169 803 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 IKBKEQ14164 716 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 TGFBIQ15582 683 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 C18orf21Q32NC0 220 aaPredicted RBP8.86□□□□□ -0.99
SYNE1-217ENST00000466159 LYSMD3Q7Z3D4 306 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 SPPL2CQ8IUH8 684 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 MINDY1Q8N5J2 469 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 OR52B6Q8NGF0 335 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 OR2T34Q8NGX1 318 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 OR2T3Q8NH03 318 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 RIN3Q8TB24 985 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 KCNJ9Q92806 393 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 PBXIP1Q96AQ6 731 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 LRRC58Q96CX6 371 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 DUS3LQ96G46 650 aaKnown RBP8.86□□□□□ -0.99
SYNE1-217ENST00000466159 IGSF21Q96ID5 467 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 MYRFLQ96LU7 910 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 HOPXQ9BPY8 73 aaPredicted RBP8.86□□□□□ -0.99
SYNE1-217ENST00000466159 FEM1AQ9BSK4 669 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 C1orf50Q9BV19 199 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 C1QTNF3Q9BXJ4 246 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 IL17CQ9P0M4 197 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 ABCD2Q9UBJ2 740 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 CNOT11Q9UKZ1 510 aaKnown RBP8.86□□□□□ -0.99
SYNE1-217ENST00000466159 VPS9D1Q9Y2B5 631 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 YIPF1Q9Y548 306 aa8.86□□□□□ -0.99
SYNE1-217ENST00000466159 TANC1Q9C0D5 1861 aa8.85□□□□□ -0.99
SYNE1-217ENST00000466159 ASPDHA6ND91 283 aa8.85□□□□□ -0.99
SYNE1-217ENST00000466159 PITPNM1O00562 1244 aa8.85□□□□□ -0.99
SYNE1-217ENST00000466159 BAIAP3O94812 1187 aa8.85□□□□□ -0.99
SYNE1-217ENST00000466159 ABLIM3O94929 683 aa8.85□□□□□ -0.99
SYNE1-217ENST00000466159 MLYCDO95822 493 aa8.85□□□□□ -0.99
SYNE1-217ENST00000466159 TFAP2AP05549 437 aa8.85□□□□□ -0.99
SYNE1-217ENST00000466159 PRR35P0CG20 571 aa8.85□□□□□ -0.99
SYNE1-217ENST00000466159 UROSP10746 265 aa8.85□□□□□ -0.99
SYNE1-217ENST00000466159 MBL2P11226 248 aaPredicted RBP8.85□□□□□ -0.99
SYNE1-217ENST00000466159 ATP6V1B1P15313 513 aa8.85□□□□□ -0.99
SYNE1-217ENST00000466159 CKMT2P17540 419 aa8.85□□□□□ -0.99
SYNE1-217ENST00000466159 CA5AP35218 305 aa8.85□□□□□ -0.99
SYNE1-217ENST00000466159 ZFP36L2P47974 494 aaKnown RBP8.85□□□□□ -0.99
SYNE1-217ENST00000466159 CLCN4P51793 760 aa8.85□□□□□ -0.99
SYNE1-217ENST00000466159 CLCN7P51798 805 aa8.85□□□□□ -0.99
SYNE1-217ENST00000466159 RHOAP61586 193 aa8.85□□□□□ -0.99
SYNE1-217ENST00000466159 UFM1P61960 85 aa8.85□□□□□ -0.99
SYNE1-217ENST00000466159 SMAD3P84022 425 aaKnown RBP8.85□□□□□ -0.99
SYNE1-217ENST00000466159 OGFOD2Q6N063 350 aa8.85□□□□□ -0.99
SYNE1-217ENST00000466159 TXNDC11Q6PKC3 985 aa8.85□□□□□ -0.99
SYNE1-217ENST00000466159 RNF168Q8IYW5 571 aaPredicted RBP8.85□□□□□ -0.99
SYNE1-217ENST00000466159 CDYL2Q8N8U2 506 aa8.85□□□□□ -0.99
SYNE1-217ENST00000466159 DNAJB14Q8TBM8 379 aa8.85□□□□□ -0.99
SYNE1-217ENST00000466159 ZFRQ96KR1 1074 aaKnown RBP8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 229.6 ms