RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 CCNYQ8ND76 341 aa22.32■■□□□ 1.16
USP4-208ENST00000464168 HDAC11Q96DB2 347 aa22.32■■□□□ 1.16
USP4-208ENST00000464168 C9orf72Q96LT7 481 aa22.32■■□□□ 1.16
USP4-208ENST00000464168 ADGRE3Q9BY15 652 aa22.32■■□□□ 1.16
USP4-208ENST00000464168 TRIM39Q9HCM9 518 aa22.32■■□□□ 1.16
USP4-208ENST00000464168 DTLQ9NZJ0 730 aa22.32■■□□□ 1.16
USP4-208ENST00000464168 SLC23A2Q9UGH3 650 aa22.32■■□□□ 1.16
USP4-208ENST00000464168 MRPS18BQ9Y676 258 aaKnown RBP22.32■■□□□ 1.16
USP4-208ENST00000464168 SLC30A1Q9Y6M5 507 aa22.32■■□□□ 1.16
USP4-208ENST00000464168 KCNK1O00180 336 aa22.31■■□□□ 1.16
USP4-208ENST00000464168 SLC25A14O95258 325 aaPredicted RBP22.31■■□□□ 1.16
USP4-208ENST00000464168 XRCC1P18887 633 aaPredicted RBP22.31■■□□□ 1.16
USP4-208ENST00000464168 TCN2P20062 427 aa22.31■■□□□ 1.16
USP4-208ENST00000464168 PBX1P40424 430 aa22.31■■□□□ 1.16
USP4-208ENST00000464168 UBAP2LQ14157 1087 aaKnown RBP22.31■■□□□ 1.16
USP4-208ENST00000464168 IQCB1Q15051 598 aa22.31■■□□□ 1.16
USP4-208ENST00000464168 C16orf46Q6P387 395 aa22.31■■□□□ 1.16
USP4-208ENST00000464168 ADGRG6Q86SQ4 1221 aa22.31■■□□□ 1.16
USP4-208ENST00000464168 MAP7D3Q8IWC1 876 aa22.31■■□□□ 1.16
USP4-208ENST00000464168 ESX1Q8N693 406 aa22.31■■□□□ 1.16
USP4-208ENST00000464168 GPR26Q8NDV2 337 aa22.31■■□□□ 1.16
USP4-208ENST00000464168 SPATA16Q9BXB7 569 aa22.31■■□□□ 1.16
USP4-208ENST00000464168 OSGEPL1Q9H4B0 414 aa22.31■■□□□ 1.16
USP4-208ENST00000464168 ANKMY1Q9P2S6 941 aa22.31■■□□□ 1.16
USP4-208ENST00000464168 RPS6KL1Q9Y6S9 549 aa22.31■■□□□ 1.16
USP4-208ENST00000464168 CHUKO15111 745 aa22.3■■□□□ 1.16
USP4-208ENST00000464168 PROSCO94903 275 aa22.3■■□□□ 1.16
USP4-208ENST00000464168 ZNF28P17035 718 aa22.3■■□□□ 1.16
USP4-208ENST00000464168 TYRP1P17643 537 aa22.3■■□□□ 1.16
USP4-208ENST00000464168 SLC19A1P41440 591 aa22.3■■□□□ 1.16
USP4-208ENST00000464168 FOXM1Q08050 763 aa22.3■■□□□ 1.16
USP4-208ENST00000464168 GALNT3Q14435 633 aa22.3■■□□□ 1.16
USP4-208ENST00000464168 FAM182AQ5T1J6 154 aa22.3■■□□□ 1.16
USP4-208ENST00000464168 ALS2CLQ60I27 953 aa22.3■■□□□ 1.16
USP4-208ENST00000464168 TMEM26Q6ZUK4 368 aa22.3■■□□□ 1.16
USP4-208ENST00000464168 RNF31Q96EP0 1072 aa22.3■■□□□ 1.16
USP4-208ENST00000464168 TRIB3Q96RU7 358 aa22.3■■□□□ 1.16
USP4-208ENST00000464168 ULBP3Q9BZM4 244 aa22.3■■□□□ 1.16
USP4-208ENST00000464168 ZFYVE1Q9HBF4 777 aa22.3■■□□□ 1.16
USP4-208ENST00000464168 ZNF624Q9P2J8 865 aaPredicted RBP22.3■■□□□ 1.16
USP4-208ENST00000464168 SPTAN1Q13813 2472 aaKnown RBP22.3■■□□□ 1.16
USP4-208ENST00000464168 GPR89AB7ZAQ6 455 aa22.29■■□□□ 1.16
USP4-208ENST00000464168 UBXN7O94888 489 aa22.29■■□□□ 1.16
USP4-208ENST00000464168 GPR89BP0CG08 455 aa22.29■■□□□ 1.16
USP4-208ENST00000464168 NOP2P46087 812 aaKnown RBP22.29■■□□□ 1.16
USP4-208ENST00000464168 IFI35P80217 286 aaPredicted RBP22.29■■□□□ 1.16
USP4-208ENST00000464168 ZBED6P86452 979 aa22.29■■□□□ 1.16
USP4-208ENST00000464168 ZBTB17Q13105 803 aa22.29■■□□□ 1.16
USP4-208ENST00000464168 ZNF569Q5MCW4 686 aa22.29■■□□□ 1.16
USP4-208ENST00000464168 CRTC3Q6UUV7 619 aa22.29■■□□□ 1.16
USP4-208ENST00000464168 CPLX3Q8WVH0 158 aa22.29■■□□□ 1.16
USP4-208ENST00000464168 TGM7Q96PF1 710 aa22.29■■□□□ 1.16
USP4-208ENST00000464168 ZSCAN5AQ9BUG6 496 aa22.29■■□□□ 1.16
USP4-208ENST00000464168 NENFQ9UMX5 172 aa22.29■■□□□ 1.16
USP4-208ENST00000464168 SHOC2Q9UQ13 582 aa22.29■■□□□ 1.16
USP4-208ENST00000464168 UTP20O75691 2785 aaKnown RBP22.29■■□□□ 1.16
USP4-208ENST00000464168 CLEC18AA5D8T8 446 aa22.28■■□□□ 1.16
USP4-208ENST00000464168 PRR19A6NJB7 356 aa22.28■■□□□ 1.16
USP4-208ENST00000464168 VIPP01282 170 aa22.28■■□□□ 1.16
USP4-208ENST00000464168 KRT7P08729 469 aa22.28■■□□□ 1.16
USP4-208ENST00000464168 PIRTP0C851 137 aa22.28■■□□□ 1.16
USP4-208ENST00000464168 ANP32AP39687 249 aaKnown RBP22.28■■□□□ 1.16
USP4-208ENST00000464168 LEPRP48357 1165 aaKnown RBP22.28■■□□□ 1.16
USP4-208ENST00000464168 DCDC1P59894 354 aa22.28■■□□□ 1.16
USP4-208ENST00000464168 SH3BP2P78314 561 aa22.28■■□□□ 1.16
USP4-208ENST00000464168 PPIDQ08752 370 aaKnown RBP22.28■■□□□ 1.16
USP4-208ENST00000464168 LACTB2Q53H82 288 aaPredicted RBP22.28■■□□□ 1.16
USP4-208ENST00000464168 C6orf15Q6UXA7 325 aaPredicted RBP22.28■■□□□ 1.16
USP4-208ENST00000464168 CLEC18BQ6UXF7 455 aa22.28■■□□□ 1.16
USP4-208ENST00000464168 TMC3Q7Z5M5 1100 aa22.28■■□□□ 1.16
USP4-208ENST00000464168 CLEC18CQ8NCF0 446 aa22.28■■□□□ 1.16
USP4-208ENST00000464168 RAPGEF5Q92565 580 aa22.28■■□□□ 1.16
USP4-208ENST00000464168 GLYATL1Q969I3 302 aa22.28■■□□□ 1.16
USP4-208ENST00000464168 RNF157Q96PX1 679 aa22.28■■□□□ 1.16
USP4-208ENST00000464168 CTTNBP2NLQ9P2B4 639 aa22.28■■□□□ 1.16
USP4-208ENST00000464168 CAPN11Q9UMQ6 739 aa22.28■■□□□ 1.16
USP4-208ENST00000464168 KCTD3Q9Y597 815 aa22.28■■□□□ 1.16
USP4-208ENST00000464168 KCNMB2Q9Y691 235 aa22.28■■□□□ 1.16
USP4-208ENST00000464168 RP1L1Q8IWN7 2480 aaPredicted RBP22.28■■□□□ 1.16
USP4-208ENST00000464168 KMOO15229 486 aa22.27■■□□□ 1.16
USP4-208ENST00000464168 TOX3O15405 576 aaPredicted RBP22.27■■□□□ 1.16
USP4-208ENST00000464168 MTA2O94776 668 aa22.27■■□□□ 1.16
USP4-208ENST00000464168 ZNF7P17097 686 aaPredicted RBP22.27■■□□□ 1.16
USP4-208ENST00000464168 AMD1P17707 334 aa22.27■■□□□ 1.16
USP4-208ENST00000464168 SEPHS1P49903 392 aa22.27■■□□□ 1.16
USP4-208ENST00000464168 SEPT6Q14141 434 aa22.27■■□□□ 1.16
USP4-208ENST00000464168 PLA2G4EQ3MJ16 856 aa22.27■■□□□ 1.16
USP4-208ENST00000464168 TRIM48Q8IWZ4 208 aa22.27■■□□□ 1.16
USP4-208ENST00000464168 TRAM1L1Q8N609 369 aa22.27■■□□□ 1.16
USP4-208ENST00000464168 GALNT6Q8NCL4 622 aa22.27■■□□□ 1.16
USP4-208ENST00000464168 IMP4Q96G21 291 aaKnown RBP22.27■■□□□ 1.16
USP4-208ENST00000464168 OR6C1Q96RD1 312 aa22.27■■□□□ 1.16
USP4-208ENST00000464168 BRD8Q9H0E9 1235 aa22.27■■□□□ 1.16
USP4-208ENST00000464168 ZNF768Q9H5H4 540 aaKnown RBP22.27■■□□□ 1.16
USP4-208ENST00000464168 MAGEE1Q9HCI5 957 aa22.27■■□□□ 1.16
USP4-208ENST00000464168 NFKBIL1Q9UBC1 381 aaPredicted RBP22.27■■□□□ 1.16
USP4-208ENST00000464168 CROTQ9UKG9 612 aa22.27■■□□□ 1.16
USP4-208ENST00000464168 DNAJC16Q9Y2G8 782 aa22.27■■□□□ 1.16
USP4-208ENST00000464168 SPENQ96T58 3664 aaKnown RBP22.27■■□□□ 1.16
USP4-208ENST00000464168 TEX15Q9BXT5 2789 aa22.27■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms