RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 ADGRE3Q9BY15 652 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 ABCG4Q9H172 646 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 CASS4Q9NQ75 786 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 PIH1D1Q9NWS0 290 aaKnown RBP12.1□□□□□ -0.47
PTPRF-208ENST00000437607 CHMP2BQ9UQN3 213 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 CHKBQ9Y259 395 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 MAD1L1Q9Y6D9 718 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 NAV2Q8IVL1 2488 aa12.1□□□□□ -0.47
PTPRF-208ENST00000437607 A0A1W2PQ67 120 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 C16orf96A6NNT2 1141 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 CDRT15L2A8MXV6 281 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 E7ESA3 106 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 H3BM21 787 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 FPGTO14772 594 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 TPP1O14773 563 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 TSPAN6O43657 245 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 BANF1O75531 89 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 AGTP01019 485 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 EPOP01588 193 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 UGT2B4P06133 528 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 JUNDP17535 347 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 NFKBIAP25963 317 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 MGAT1P26572 445 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 GRIA1P42261 906 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 CHRNA4P43681 627 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 PDX1P52945 283 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 PMS2P54278 862 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 RPL26P61254 145 aaKnown RBP12.09□□□□□ -0.47
PTPRF-208ENST00000437607 VAC14Q08AM6 782 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 LY6DQ14210 128 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 CCDC38Q502W7 563 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 TAF1BQ53T94 588 aaPredicted RBP12.09□□□□□ -0.47
PTPRF-208ENST00000437607 FNBP1LQ5T0N5 605 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 CAND1Q86VP6 1230 aaKnown RBP12.09□□□□□ -0.47
PTPRF-208ENST00000437607 SLC35F3Q8IY50 421 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 FBXO36Q8NEA4 188 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 LMX1AQ8TE12 382 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 UBLCP1Q8WVY7 318 aaPredicted RBP12.09□□□□□ -0.47
PTPRF-208ENST00000437607 ASB12Q8WXK4 309 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 CENPTQ96BT3 561 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 STAMBPL1Q96FJ0 436 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 CPEB1Q9BZB8 566 aaKnown RBP12.09□□□□□ -0.47
PTPRF-208ENST00000437607 DPH1Q9BZG8 443 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 IL22Q9GZX6 179 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 CDC42EP4Q9H3Q1 356 aaKnown RBP12.09□□□□□ -0.47
PTPRF-208ENST00000437607 THSD1Q9NS62 852 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 SYBUQ9NX95 663 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 RPL26L1Q9UNX3 145 aaKnown RBP12.09□□□□□ -0.47
PTPRF-208ENST00000437607 PCDHGC4Q9Y5F7 938 aa12.09□□□□□ -0.47
PTPRF-208ENST00000437607 HECTD1Q9ULT8 2610 aa12.08□□□□□ -0.47
PTPRF-208ENST00000437607 TLN1Q9Y490 2541 aaKnown RBP12.08□□□□□ -0.48
PTPRF-208ENST00000437607 SDK2Q58EX2 2172 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 LOC285095A0A1B0GVY8 99 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 SDR42E2A6NKP2 422 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 AREL1O15033 823 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 AVILO75366 819 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 PGLSO95336 258 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 PGAM1P18669 254 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 XPAP23025 273 aaPredicted RBP12.08□□□□□ -0.48
PTPRF-208ENST00000437607 IGFALSP35858 605 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 ELK3P41970 407 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 MAGEA4P43358 317 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 NPY2RP49146 381 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 C1orf61Q13536 156 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 POU6F1Q14863 301 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 FASTKD3Q14CZ7 662 aaKnown RBP12.08□□□□□ -0.48
PTPRF-208ENST00000437607 ZNF805Q5CZA5 627 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 LRRC73Q5JTD7 316 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 SIRPB2Q5JXA9 342 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 DENND2CQ68D51 928 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 BRAT1Q6PJG6 821 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 GDPD4Q6W3E5 623 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 USP45Q70EL2 814 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 TRMT10CQ7L0Y3 403 aaKnown RBP12.08□□□□□ -0.48
PTPRF-208ENST00000437607 CAMK1DQ8IU85 385 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 ANKMY2Q8IV38 441 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 NDUFAF2Q8N183 169 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 MREGQ8N565 214 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 DENND6BQ8NEG7 585 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 PYROXD1Q8WU10 500 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 ANKRD7Q92527 254 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 COL26A1Q96A83 441 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 CFAP36Q96G28 342 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 C9orf72Q96LT7 481 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 ZNF641Q96N77 438 aaPredicted RBP12.08□□□□□ -0.48
PTPRF-208ENST00000437607 TRIB3Q96RU7 358 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 NAT9Q9BTE0 207 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 LRRC61Q9BV99 259 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 CLPBQ9H078 707 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 VPS37BQ9H9H4 285 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 EVA1BQ9NVM1 165 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 PCDHGA8Q9Y5G5 932 aa12.08□□□□□ -0.48
PTPRF-208ENST00000437607 FLNCQ14315 2725 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 HEATR9A2RTY3 570 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 CYSRT1A8MQ03 144 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 J3QKU1 62 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 K7ENP7 123 aa12.07□□□□□ -0.48
PTPRF-208ENST00000437607 TRAFD1O14545 582 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-208ENST00000437607 HTRA2O43464 458 aaPredicted RBP12.07□□□□□ -0.48
PTPRF-208ENST00000437607 SPAG6O75602 509 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms