RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 ETNPPLQ8TBG4 499 aa3.19□□□□□ -1.9
CLK1-204ENST00000432425 TM9SF4Q92544 642 aa3.19□□□□□ -1.9
CLK1-204ENST00000432425 ARHGEF26Q96DR7 871 aa3.19□□□□□ -1.9
CLK1-204ENST00000432425 RBM4Q9BWF3 364 aaKnown RBP3.19□□□□□ -1.9
CLK1-204ENST00000432425 BARHL1Q9BZE3 327 aa3.19□□□□□ -1.9
CLK1-204ENST00000432425 SCPEP1Q9HB40 452 aa3.19□□□□□ -1.9
CLK1-204ENST00000432425 RANGRFQ9HD47 186 aaPredicted RBP3.19□□□□□ -1.9
CLK1-204ENST00000432425 CWC15Q9P013 229 aaKnown RBP3.19□□□□□ -1.9
CLK1-204ENST00000432425 ZKSCAN7Q9P0L1 754 aaPredicted RBP3.19□□□□□ -1.9
CLK1-204ENST00000432425 COPG2Q9UBF2 871 aa3.19□□□□□ -1.9
CLK1-204ENST00000432425 KANSL1LA0AUZ9 987 aa3.18□□□□□ -1.9
CLK1-204ENST00000432425 ANKRD66B4E2M5 251 aa3.18□□□□□ -1.9
CLK1-204ENST00000432425 PCDH7O60245 1069 aa3.18□□□□□ -1.9
CLK1-204ENST00000432425 PRKNO60260 465 aaPredicted RBP3.18□□□□□ -1.9
CLK1-204ENST00000432425 TUBBP07437 444 aa3.18□□□□□ -1.9
CLK1-204ENST00000432425 RNF224P0DH78 156 aa3.18□□□□□ -1.9
CLK1-204ENST00000432425 CSF2RAP15509 400 aa3.18□□□□□ -1.9
CLK1-204ENST00000432425 BSGP35613 385 aa3.18□□□□□ -1.9
CLK1-204ENST00000432425 ARCN1P48444 511 aaKnown RBP3.18□□□□□ -1.9
CLK1-204ENST00000432425 HSD17B4P51659 736 aa3.18□□□□□ -1.9
CLK1-204ENST00000432425 TUBB4BP68371 445 aa3.18□□□□□ -1.9
CLK1-204ENST00000432425 PMP22Q01453 160 aa3.18□□□□□ -1.9
CLK1-204ENST00000432425 CEBPZQ03701 1054 aaKnown RBP3.18□□□□□ -1.9
CLK1-204ENST00000432425 CDC16Q13042 620 aa3.18□□□□□ -1.9
CLK1-204ENST00000432425 ZNF876PQ49A33 203 aa3.18□□□□□ -1.9
CLK1-204ENST00000432425 ARHGAP11AQ6P4F7 1023 aa3.18□□□□□ -1.9
CLK1-204ENST00000432425 DIS3L2Q8IYB7 885 aaKnown RBP3.18□□□□□ -1.9
CLK1-204ENST00000432425 STPG4Q8N801 248 aa3.18□□□□□ -1.9
CLK1-204ENST00000432425 TMEM116Q8NCL8 245 aa3.18□□□□□ -1.9
CLK1-204ENST00000432425 ZNF524Q96C55 264 aa3.18□□□□□ -1.9
CLK1-204ENST00000432425 ABHD8Q96I13 439 aa3.18□□□□□ -1.9
CLK1-204ENST00000432425 SEC62Q99442 399 aaKnown RBP3.18□□□□□ -1.9
CLK1-204ENST00000432425 MAGIXQ9H6Y5 334 aa3.18□□□□□ -1.9
CLK1-204ENST00000432425 LIMA1Q9UHB6 759 aaKnown RBP3.18□□□□□ -1.9
CLK1-204ENST00000432425 CLIC4Q9Y696 253 aa3.18□□□□□ -1.9
CLK1-204ENST00000432425 A0A1B0GVC2 190 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 BLOC1S5-TXNDC5H3BN57 136 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 TMEM178BH3BS89 294 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 ATP2A1O14983 1001 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 TGFB1I1O43294 461 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 CTSVO60911 334 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 NDUFS3O75489 264 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 PDE9AO76083 593 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 MLYCDO95822 493 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 AGR2O95994 175 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 DCTP40126 519 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 PBX3P40426 434 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 VEGFCP49767 419 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 NR0B1P51843 470 aaKnown RBP3.17□□□□□ -1.9
CLK1-204ENST00000432425 MRPS34P82930 218 aaKnown RBP3.17□□□□□ -1.9
CLK1-204ENST00000432425 RUNX1T1Q06455 604 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 TMEM30BQ3MIR4 351 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 ZNF805Q5CZA5 627 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 SEPT14Q6ZU15 432 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 SDCCAG8Q86SQ7 713 aaPredicted RBP3.17□□□□□ -1.9
CLK1-204ENST00000432425 SGCDQ92629 289 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 NEUROD6Q96NK8 337 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 SMC6Q96SB8 1091 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 SEMA3CQ99985 751 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 PIGMQ9H3S5 423 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 FBXW11Q9UKB1 542 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 RPS6KL1Q9Y6S9 549 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 A0A1W2PP11 408 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 SMIM1B2RUZ4 78 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 KCNK5O95279 499 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 BAG4O95429 457 aaKnown RBP3.17□□□□□ -1.9
CLK1-204ENST00000432425 NR1D1P20393 614 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 MCCP23508 829 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 CCR9P51686 369 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 TFAP4Q01664 338 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 LRMPQ12912 555 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 RALBP1Q15311 655 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 NAB2Q15742 525 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 ADIPOQQ15848 244 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 ASPRV1Q53RT3 343 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 LONP2Q86WA8 852 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 PM20D2Q8IYS1 436 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 PAF1Q8N7H5 531 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 ZNF248Q8NDW4 579 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 HM13Q8TCT9 377 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 TAS1R2Q8TE23 839 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 OXNAD1Q96HP4 312 aaPredicted RBP3.17□□□□□ -1.9
CLK1-204ENST00000432425 C17orf77Q96MU5 243 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 MOV10L1Q9BXT6 1211 aaKnown RBP3.17□□□□□ -1.9
CLK1-204ENST00000432425 MAF1Q9H063 256 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 RRP7BPQ9NSQ0 103 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 TERF2IPQ9NYB0 399 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 C9orf78Q9NZ63 289 aaPredicted RBP3.17□□□□□ -1.9
CLK1-204ENST00000432425 ZNF624Q9P2J8 865 aaPredicted RBP3.17□□□□□ -1.9
CLK1-204ENST00000432425 R3HDM2Q9Y2K5 976 aaKnown RBP3.17□□□□□ -1.9
CLK1-204ENST00000432425 TMEM98Q9Y2Y6 226 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 JRKLQ9Y4A0 524 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 KCNE2Q9Y6J6 123 aa3.17□□□□□ -1.9
CLK1-204ENST00000432425 A0A0G2JLW4 131 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 FAM237BA0A1B0GVD1 139 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 H3BQ06 376 aaPredicted RBP3.16□□□□□ -1.9
CLK1-204ENST00000432425 CIDEAO60543 219 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 DAB1O75553 588 aa3.16□□□□□ -1.9
CLK1-204ENST00000432425 RTN3O95197 1032 aaPredicted RBP3.16□□□□□ -1.9
CLK1-204ENST00000432425 CCNDBP1O95273 360 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms