RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ELMO2Q96JJ3 720 aa11.42□□□□□ -0.58
USP4-204ENST00000416417 DPYSL5Q9BPU6 564 aa11.42□□□□□ -0.58
USP4-204ENST00000416417 GPR63Q9BZJ6 419 aa11.42□□□□□ -0.58
USP4-204ENST00000416417 B3GNT4Q9C0J1 378 aa11.42□□□□□ -0.58
USP4-204ENST00000416417 CARD9Q9H257 536 aa11.42□□□□□ -0.58
USP4-204ENST00000416417 HAUS2Q9NVX0 235 aa11.42□□□□□ -0.58
USP4-204ENST00000416417 OGFRQ9NZT2 677 aa11.42□□□□□ -0.58
USP4-204ENST00000416417 IL17BQ9UHF5 180 aa11.42□□□□□ -0.58
USP4-204ENST00000416417 TMPRSS11EQ9UL52 423 aa11.42□□□□□ -0.58
USP4-204ENST00000416417 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.42□□□□□ -0.583e-7■■□□□ 13.3
USP4-204ENST00000416417 MRPS18BQ9Y676 258 aaKnown RBP11.42□□□□□ -0.58
USP4-204ENST00000416417 GPR39O43194 453 aa11.41□□□□□ -0.58
USP4-204ENST00000416417 SUV39H1O43463 412 aa11.41□□□□□ -0.58
USP4-204ENST00000416417 ZNF28P17035 718 aa11.41□□□□□ -0.58
USP4-204ENST00000416417 BPIP17213 487 aa11.41□□□□□ -0.58
USP4-204ENST00000416417 RPL10P27635 214 aaKnown RBP11.41□□□□□ -0.58
USP4-204ENST00000416417 MAN1A1P33908 653 aa11.41□□□□□ -0.58
USP4-204ENST00000416417 CA5AP35218 305 aa11.41□□□□□ -0.58
USP4-204ENST00000416417 SLC19A1P41440 591 aa11.41□□□□□ -0.58
USP4-204ENST00000416417 LEPRP48357 1165 aaKnown RBP11.41□□□□□ -0.58
USP4-204ENST00000416417 SEPHS1P49903 392 aa11.41□□□□□ -0.58
USP4-204ENST00000416417 DRG2P55039 364 aaKnown RBP11.41□□□□□ -0.58
USP4-204ENST00000416417 UBE2IP63279 158 aaKnown RBP11.41□□□□□ -0.58
USP4-204ENST00000416417 CDK18Q07002 472 aa11.41□□□□□ -0.58
USP4-204ENST00000416417 INSCQ1MX18 579 aa11.41□□□□□ -0.58
USP4-204ENST00000416417 BORAQ6PGQ7 559 aa11.41□□□□□ -0.58
USP4-204ENST00000416417 MFSD7Q6UXD7 560 aa11.41□□□□□ -0.58
USP4-204ENST00000416417 PHYKPLQ8IUZ5 450 aa11.41□□□□□ -0.58
USP4-204ENST00000416417 OR8K1Q8NGG5 319 aa11.41□□□□□ -0.58
USP4-204ENST00000416417 GLYATL1Q969I3 302 aa11.41□□□□□ -0.58
USP4-204ENST00000416417 IQCDQ96DY2 449 aa11.41□□□□□ -0.58
USP4-204ENST00000416417 TGM7Q96PF1 710 aa11.41□□□□□ -0.58
USP4-204ENST00000416417 DNAJC7Q99615 494 aa11.41□□□□□ -0.58
USP4-204ENST00000416417 HERPUD2Q9BSE4 406 aa11.41□□□□□ -0.58
USP4-204ENST00000416417 MAK16Q9BXY0 300 aaKnown RBP11.41□□□□□ -0.58
USP4-204ENST00000416417 ASPSCR1Q9BZE9 553 aa11.41□□□□□ -0.58
USP4-204ENST00000416417 SPRY4Q9C004 299 aa11.41□□□□□ -0.58
USP4-204ENST00000416417 STN1Q9H668 368 aaKnown RBP11.41□□□□□ -0.58
USP4-204ENST00000416417 RMI1Q9H9A7 625 aa11.41□□□□□ -0.58
USP4-204ENST00000416417 TRIM39Q9HCM9 518 aa11.41□□□□□ -0.58
USP4-204ENST00000416417 ZNF624Q9P2J8 865 aaPredicted RBP11.41□□□□□ -0.58
USP4-204ENST00000416417 ZFC3H1O60293 1989 aaKnown RBP11.4□□□□□ -0.58
USP4-204ENST00000416417 OR52A4PA6NMU1 304 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 PDZK1P1A8MUH7 402 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 TERTO14746 1132 aaKnown RBP11.4□□□□□ -0.58
USP4-204ENST00000416417 BUD23O43709 281 aaKnown RBP11.4□□□□□ -0.58
USP4-204ENST00000416417 KIF1CO43896 1103 aaKnown RBP11.4□□□□□ -0.58
USP4-204ENST00000416417 STK17BO94768 372 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 BRAFP15056 766 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 PECAM1P16284 738 aaPredicted RBP11.4□□□□□ -0.58
USP4-204ENST00000416417 ZNF7P17097 686 aaPredicted RBP11.4□□□□□ -0.58
USP4-204ENST00000416417 CHRNA4P43681 627 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 POLE2P56282 527 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 SH3BP2P78314 561 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 FOXM1Q08050 763 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 PDK1Q15118 436 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 SKIDA1Q1XH10 827 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 KAZNQ674X7 775 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 C16orf46Q6P387 395 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 ATG14Q6ZNE5 492 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 ZNF547Q8IVP9 402 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 NLGN4XQ8N0W4 816 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 SLC25A41Q8N5S1 370 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 NLGN4YQ8NFZ3 816 aaPredicted RBP11.4□□□□□ -0.58
USP4-204ENST00000416417 NAT14Q8WUY8 206 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 SH3KBP1Q96B97 665 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 TADA1Q96BN2 335 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 OLFM3Q96PB7 478 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 SLC25A18Q9H1K4 315 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 SLC25A51Q9H1U9 297 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 GOLPH3Q9H4A6 298 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 GPN2Q9H9Y4 310 aaPredicted RBP11.4□□□□□ -0.58
USP4-204ENST00000416417 GLOD4Q9HC38 313 aa11.4□□□□□ -0.58
USP4-204ENST00000416417 ZNF71Q9NQZ8 489 aaPredicted RBP11.4□□□□□ -0.58
USP4-204ENST00000416417 GEMIN8Q9NWZ8 242 aaKnown RBP11.4□□□□□ -0.58
USP4-204ENST00000416417 KIR2DS5A0A0G2JLQ3 304 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 A0A0G2JNG1 304 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 RGSL1A5PLK6 1076 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 KIR2DS3K7RE56 304 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 POLR1CO15160 346 aaPredicted RBP11.4□□□□□ -0.59
USP4-204ENST00000416417 PPFIA2O75334 1257 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 VIPP01282 170 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 F8A1P23610 371 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 PTPN3P26045 913 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 OAS2P29728 719 aaKnown RBP11.4□□□□□ -0.59
USP4-204ENST00000416417 CD68P34810 354 aaPredicted RBP11.4□□□□□ -0.59
USP4-204ENST00000416417 RAB15P59190 212 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 PPP1CAP62136 330 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 ADCY2Q08462 1091 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 KCNAB2Q13303 367 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 KIR2DS5Q14953 304 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 DEFB109BQ30KR1 87 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 ATP13A5Q4VNC0 1218 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 CEACAM20Q6UY09 585 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 LRRTM4Q86VH4 590 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 TRIM48Q8IWZ4 208 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 TRAM1L1Q8N609 369 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 GDAP1Q8TB36 358 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 RSC1A1Q92681 617 aa11.4□□□□□ -0.59
USP4-204ENST00000416417 HAUS1Q96CS2 278 aa11.4□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms