RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 NPHS1O60500 1241 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 NR2F1P10589 423 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 FGFR1P11362 822 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 AMPD1P23109 780 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 NATD1Q8N6N6 113 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 IRGQQ8WZA9 623 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 KAT2BQ92831 832 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 ERLEC1Q96DZ1 483 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 CADM1Q9BY67 442 aaKnown RBP12.82□□□□□ -0.36
COL6A3-206ENST00000409809 SLCO1B3Q9NPD5 702 aa12.82□□□□□ -0.36
COL6A3-206ENST00000409809 BTBD19C9JJ37 291 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 KLF11O14901 512 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 UROSP10746 265 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 DALRD3Q5D0E6 543 aaKnown RBP12.81□□□□□ -0.36
COL6A3-206ENST00000409809 PTAR1Q7Z6K3 402 aaPredicted RBP12.81□□□□□ -0.36
COL6A3-206ENST00000409809 PRELID2Q8N945 189 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 ALG9Q9H6U8 611 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 FARSBQ9NSD9 589 aaKnown RBP12.81□□□□□ -0.36
COL6A3-206ENST00000409809 CALML5Q9NZT1 146 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 SCP2D1Q9UJQ7 156 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 RASGRP1O95267 797 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 GSTM3P21266 225 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 KIR3DL1P43629 444 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 SH2D3AQ9BRG2 576 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 ZNF69Q9UC07 566 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 PLA2G4CQ9UP65 541 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 PHF24Q9UPV7 400 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 PRKACBP22694 351 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 GRK5P34947 590 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 GRB10Q13322 594 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 MPZL3Q6UWV2 235 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 B3GNT3Q9Y2A9 372 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 TACSTD2P09758 323 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 CSTF1Q05048 431 aaKnown RBP12.81□□□□□ -0.36
COL6A3-206ENST00000409809 FAM71AQ8IYT1 594 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 UBR7Q8N806 425 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 C8orf48Q96LL4 319 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 LGR4Q9BXB1 951 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 ARMC1Q9NVT9 282 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 CDH10Q9Y6N8 788 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 HTR3EA5X5Y0 456 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 SSX5O60225 188 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 CD83Q01151 205 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 DCST1Q5T197 706 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 RETSATQ6NUM9 610 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 FAIMQ9NVQ4 179 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 MALT1Q9UDY8 824 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 C19orf81C9J6K1 198 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 EIF1AYO14602 144 aaKnown RBP12.81□□□□□ -0.36
COL6A3-206ENST00000409809 SLC25A12O75746 678 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 RPL4P36578 427 aaKnown RBP12.81□□□□□ -0.36
COL6A3-206ENST00000409809 EIF1AXP47813 144 aaKnown RBP12.81□□□□□ -0.36
COL6A3-206ENST00000409809 YAF2Q8IY57 180 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 PIGXQ8TBF5 258 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 SSX4O60224 188 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 ITGB3P05106 788 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 CD40LGP29965 261 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 SSTR3P32745 418 aaPredicted RBP12.81□□□□□ -0.36
COL6A3-206ENST00000409809 PRMT2P55345 433 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 SLC10A7Q0GE19 358 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 SSX2Q16385 188 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 OR4C6Q8NH72 309 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 JPH3Q8WXH2 748 aaPredicted RBP12.81□□□□□ -0.36
COL6A3-206ENST00000409809 SMG7Q92540 1137 aaKnown RBP12.81□□□□□ -0.36
COL6A3-206ENST00000409809 BIN3Q9NQY0 253 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 C1orf109Q9NX04 203 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 POFUT2Q9Y2G5 429 aa12.81□□□□□ -0.36
COL6A3-206ENST00000409809 MAMLD1Q13495 774 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 PRKD1Q15139 912 aaPredicted RBP12.8□□□□□ -0.36
COL6A3-206ENST00000409809 KANK2Q63ZY3 851 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 GLYATQ6IB77 296 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 PDZD9Q8IXQ8 264 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 TTLL6Q8N841 843 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 MMP19Q99542 508 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 TM9SF3Q9HD45 589 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 ZFP57Q9NU63 452 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 TAS2R9Q9NYW1 312 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 CNOT11Q9UKZ1 510 aaKnown RBP12.8□□□□□ -0.36
COL6A3-206ENST00000409809 GH1P01241 217 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 CHMP24386 653 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 MYBPC1Q00872 1141 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 FAM91A1Q658Y4 838 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 ADGRG6Q86SQ4 1221 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 CUZD1Q86UP6 607 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 OR2L5Q8NG80 312 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 TRPV4Q9HBA0 871 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 MRPS14O60783 128 aaKnown RBP12.8□□□□□ -0.36
COL6A3-206ENST00000409809 IFNA2P01563 188 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 CCNFP41002 786 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 PTGR1Q14914 329 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 GLB1LQ6UWU2 654 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 USP49Q70CQ1 688 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 ANKRD13BQ86YJ7 626 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 KIAA0895Q8NCT3 520 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 SSX3Q99909 188 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 ARHGEF4Q9NR80 690 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 JCADQ9P266 1359 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 LTKP29376 864 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 UGT2B10P36537 528 aa12.8□□□□□ -0.36
COL6A3-206ENST00000409809 CYP4F8P98187 520 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms