RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 ATXN10Q9UBB4 475 aa29.04■■■□□ 2.24
USP42-202ENST00000404008 DGKBQ9Y6T7 804 aa29.04■■■□□ 2.24
USP42-202ENST00000404008 TDRD6O60522 2096 aaKnown RBP29.04■■■□□ 2.24
USP42-202ENST00000404008 MTX2O75431 263 aa29.03■■■□□ 2.24
USP42-202ENST00000404008 FUCA1P04066 466 aa29.03■■■□□ 2.24
USP42-202ENST00000404008 ACRV1P26436 265 aa29.03■■■□□ 2.24
USP42-202ENST00000404008 RXRGP48443 463 aa29.03■■■□□ 2.24
USP42-202ENST00000404008 ATXN3P54252 364 aaPredicted RBP29.03■■■□□ 2.24
USP42-202ENST00000404008 PPARDQ03181 441 aa29.03■■■□□ 2.24
USP42-202ENST00000404008 SHBQ15464 509 aa29.03■■■□□ 2.24
USP42-202ENST00000404008 FASTKD1Q53R41 847 aaKnown RBP29.03■■■□□ 2.24
USP42-202ENST00000404008 TAS2R42Q7RTR8 314 aa29.03■■■□□ 2.24
USP42-202ENST00000404008 SERPINA9Q86WD7 417 aa29.03■■■□□ 2.24
USP42-202ENST00000404008 SERBP1Q8NC51 408 aaKnown RBP eCLIP29.03■■■□□ 2.24
USP42-202ENST00000404008 CFAP36Q96G28 342 aa29.03■■■□□ 2.24
USP42-202ENST00000404008 EDEM2Q9BV94 578 aa29.03■■■□□ 2.24
USP42-202ENST00000404008 OR2AG1Q9H205 316 aa29.03■■■□□ 2.24
USP42-202ENST00000404008 CAAP1Q9H8G2 361 aa29.03■■■□□ 2.24
USP42-202ENST00000404008 MTRF1LQ9UGC7 380 aaKnown RBP29.03■■■□□ 2.24
USP42-202ENST00000404008 A0A1B0GTQ1 180 aa29.02■■■□□ 2.24
USP42-202ENST00000404008 VEGFDO43915 354 aa29.02■■■□□ 2.24
USP42-202ENST00000404008 IVLP07476 585 aa29.02■■■□□ 2.24
USP42-202ENST00000404008 ARRB1P49407 418 aaPredicted RBP29.02■■■□□ 2.24
USP42-202ENST00000404008 HK3P52790 923 aa29.02■■■□□ 2.24
USP42-202ENST00000404008 TMEM115Q12893 351 aaPredicted RBP29.02■■■□□ 2.24
USP42-202ENST00000404008 STEAP4Q687X5 459 aa29.02■■■□□ 2.24
USP42-202ENST00000404008 UNC5AQ6ZN44 842 aa29.02■■■□□ 2.24
USP42-202ENST00000404008 CCDC25Q86WR0 208 aa29.02■■■□□ 2.24
USP42-202ENST00000404008 HID1Q8IV36 788 aa29.02■■■□□ 2.24
USP42-202ENST00000404008 PHACTR4Q8IZ21 702 aa29.02■■■□□ 2.24
USP42-202ENST00000404008 CYP4F12Q9HCS2 524 aa29.02■■■□□ 2.24
USP42-202ENST00000404008 IL1RAPL1Q9NZN1 696 aa29.02■■■□□ 2.24
USP42-202ENST00000404008 MARCH4Q9P2E8 410 aaPredicted RBP29.02■■■□□ 2.24
USP42-202ENST00000404008 SUFUQ9UMX1 484 aa29.02■■■□□ 2.24
USP42-202ENST00000404008 DYNC1LI1Q9Y6G9 523 aaKnown RBP29.02■■■□□ 2.24
USP42-202ENST00000404008 GPR89AB7ZAQ6 455 aa29.01■■■□□ 2.24
USP42-202ENST00000404008 CD3EAPO15446 510 aaKnown RBP29.01■■■□□ 2.24
USP42-202ENST00000404008 DNAJC6O75061 913 aa29.01■■■□□ 2.24
USP42-202ENST00000404008 RASGRP1O95267 797 aa29.01■■■□□ 2.24
USP42-202ENST00000404008 GPR89BP0CG08 455 aa29.01■■■□□ 2.24
USP42-202ENST00000404008 JUNDP17535 347 aa29.01■■■□□ 2.24
USP42-202ENST00000404008 BLKP51451 505 aa29.01■■■□□ 2.24
USP42-202ENST00000404008 SEMA3AQ14563 771 aa29.01■■■□□ 2.24
USP42-202ENST00000404008 LONRF1Q17RB8 773 aa29.01■■■□□ 2.24
USP42-202ENST00000404008 AASDHQ4L235 1098 aaPredicted RBP29.01■■■□□ 2.24
USP42-202ENST00000404008 PYROXD1Q8WU10 500 aa29.01■■■□□ 2.24
USP42-202ENST00000404008 TBRG4Q969Z0 631 aaKnown RBP eCLIP29.01■■■□□ 2.24
USP42-202ENST00000404008 FMO2Q99518 471 aa29.01■■■□□ 2.24
USP42-202ENST00000404008 COPS8Q99627 209 aa29.01■■■□□ 2.24
USP42-202ENST00000404008 ZCCHC2Q9C0B9 1178 aaKnown RBP29.01■■■□□ 2.24
USP42-202ENST00000404008 TCEAL2Q9H3H9 227 aaPredicted RBP29.01■■■□□ 2.24
USP42-202ENST00000404008 ZDHHC3Q9NYG2 299 aa29.01■■■□□ 2.24
USP42-202ENST00000404008 MOSPD1Q9UJG1 213 aa29.01■■■□□ 2.24
USP42-202ENST00000404008 RIF1Q5UIP0 2472 aaKnown RBP29.01■■■□□ 2.23
USP42-202ENST00000404008 IGLV3-16A0A075B6K0 115 aa29.01■■■□□ 2.23
USP42-202ENST00000404008 GOLGA8KD6RF30 607 aa29.01■■■□□ 2.23
USP42-202ENST00000404008 GOLGA8TH3BQL2 631 aa29.01■■■□□ 2.23
USP42-202ENST00000404008 CDX4O14627 284 aaPredicted RBP29.01■■■□□ 2.23
USP42-202ENST00000404008 ZNF8P17098 575 aaPredicted RBP29.01■■■□□ 2.23
USP42-202ENST00000404008 AKT1P31749 480 aa29.01■■■□□ 2.23
USP42-202ENST00000404008 SMAD1Q15797 465 aaKnown RBP29.01■■■□□ 2.23
USP42-202ENST00000404008 DBN1Q16643 649 aa29.01■■■□□ 2.23
USP42-202ENST00000404008 LYPLAL1Q5VWZ2 237 aa29.01■■■□□ 2.23
USP42-202ENST00000404008 MARK2Q7KZI7 788 aaKnown RBP29.01■■■□□ 2.23
USP42-202ENST00000404008 RD3Q7Z3Z2 195 aa29.01■■■□□ 2.23
USP42-202ENST00000404008 RBFAQ8N0V3 343 aa29.01■■■□□ 2.23
USP42-202ENST00000404008 SLC13A1Q9BZW2 595 aa29.01■■■□□ 2.23
USP42-202ENST00000404008 ANKZF1Q9H8Y5 726 aa29.01■■■□□ 2.23
USP42-202ENST00000404008 RMI1Q9H9A7 625 aa29.01■■■□□ 2.23
USP42-202ENST00000404008 CARS2Q9HA77 564 aaKnown RBP29.01■■■□□ 2.23
USP42-202ENST00000404008 C20orf96Q9NUD7 363 aaPredicted RBP29.01■■■□□ 2.23
USP42-202ENST00000404008 DNAAF2Q9NVR5 837 aaKnown RBP29.01■■■□□ 2.23
USP42-202ENST00000404008 APOBEC3BQ9UH17 382 aaKnown RBP29.01■■■□□ 2.23
USP42-202ENST00000404008 NFU1Q9UMS0 254 aa29.01■■■□□ 2.23
USP42-202ENST00000404008 PCYT1BQ9Y5K3 369 aaPredicted RBP29.01■■■□□ 2.23
USP42-202ENST00000404008 H3BM21 787 aa29■■■□□ 2.23
USP42-202ENST00000404008 NUAK1O60285 661 aa29■■■□□ 2.23
USP42-202ENST00000404008 TNFP01375 233 aa29■■■□□ 2.23
USP42-202ENST00000404008 MSH3P20585 1137 aa29■■■□□ 2.23
USP42-202ENST00000404008 HNRNPKP61978 463 aaKnown RBP eCLIP29■■■□□ 2.23
USP42-202ENST00000404008 B4GALNT1Q00973 533 aa29■■■□□ 2.23
USP42-202ENST00000404008 AARS2Q5JTZ9 985 aaKnown RBP29■■■□□ 2.23
USP42-202ENST00000404008 CERS6Q6ZMG9 384 aa29■■■□□ 2.23
USP42-202ENST00000404008 UNC5BQ8IZJ1 945 aa29■■■□□ 2.23
USP42-202ENST00000404008 PNPLA1Q8N8W4 532 aa29■■■□□ 2.23
USP42-202ENST00000404008 GPR150Q8NGU9 434 aa29■■■□□ 2.23
USP42-202ENST00000404008 HEXDCQ8WVB3 486 aa29■■■□□ 2.23
USP42-202ENST00000404008 CCDC97Q96F63 343 aaPredicted RBP29■■■□□ 2.23
USP42-202ENST00000404008 TSPYL1Q9H0U9 437 aa29■■■□□ 2.23
USP42-202ENST00000404008 RRAGDQ9NQL2 400 aaPredicted RBP29■■■□□ 2.23
USP42-202ENST00000404008 CHUKO15111 745 aa28.99■■■□□ 2.23
USP42-202ENST00000404008 YKT6O15498 198 aa28.99■■■□□ 2.23
USP42-202ENST00000404008 CDK14O94921 469 aa28.99■■■□□ 2.23
USP42-202ENST00000404008 MAGEA4P43358 317 aa28.99■■■□□ 2.23
USP42-202ENST00000404008 GNPDA1P46926 289 aa28.99■■■□□ 2.23
USP42-202ENST00000404008 CCT8P50990 548 aa28.99■■■□□ 2.23
USP42-202ENST00000404008 IL9RQ01113 521 aa28.99■■■□□ 2.23
USP42-202ENST00000404008 MRNIPQ6NTE8 343 aa28.99■■■□□ 2.23
USP42-202ENST00000404008 NEPROQ6NW34 567 aa28.99■■■□□ 2.23
USP42-202ENST00000404008 CEP128Q6ZU80 1094 aa28.99■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms