RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 EDEM1Q92611 657 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 ASB2Q96Q27 587 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 KCTD15Q96SI1 283 aaPredicted RBP9.25□□□□□ -0.93
COL28A1-201ENST00000399429 RAB6CQ9H0N0 254 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 RGS17Q9UGC6 210 aaPredicted RBP9.25□□□□□ -0.93
COL28A1-201ENST00000399429 VWA7Q9Y334 891 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 TNS2Q63HR2 1409 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 NCAM2O15394 837 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 OR7A10O76100 309 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 GLP2RO95838 553 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 GUCA1CO95843 209 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 SUPT20HL2P0C7V6 817 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 ADRA2BP18089 450 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 EN1Q05925 392 aaPredicted RBP9.25□□□□□ -0.93
COL28A1-201ENST00000399429 ELP6Q0PNE2 266 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 SUPT20HL1Q3ZLR7 823 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 PRR5LQ6MZQ0 368 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 OTOP3Q7RTS5 596 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 KIAA0319LQ8IZA0 1049 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 EFHBQ8N7U6 833 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 OR13F1Q8NGS4 319 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 SPON2Q9BUD6 331 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 PXMP2Q9NR77 195 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 VPS28Q9UK41 221 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 TMX2Q9Y320 296 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 GOLGA4Q13439 2230 aaKnown RBP9.25□□□□□ -0.93
COL28A1-201ENST00000399429 PTPRJQ12913 1337 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 ZNF541Q9H0D2 1346 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 YDJCA8MPS7 323 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 CCL22O00626 93 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 OR2B3O76000 313 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 CASP3P42574 277 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 BLVRAP53004 296 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 NUDT6P53370 316 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 CRY1Q16526 586 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 HIST2H2ACQ16777 129 aaPredicted RBP9.25□□□□□ -0.93
COL28A1-201ENST00000399429 PPP1R26Q5T8A7 1209 aaPredicted RBP9.25□□□□□ -0.93
COL28A1-201ENST00000399429 APOBEC3HQ6NTF7 200 aaKnown RBP9.25□□□□□ -0.93
COL28A1-201ENST00000399429 GPR153Q6NV75 609 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 DHRS4L2Q6PKH6 230 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 EIF3MQ7L2H7 374 aaKnown RBP9.25□□□□□ -0.93
COL28A1-201ENST00000399429 SLC51AQ86UW1 340 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 RASAL3Q86YV0 1011 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 MFSD2AQ8NA29 543 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 ESAMQ96AP7 390 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 MED30Q96HR3 178 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 ELOVL4Q9GZR5 314 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 MUC13Q9H3R2 512 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 TRMT6Q9UJA5 497 aaKnown RBP9.25□□□□□ -0.93
COL28A1-201ENST00000399429 FZD1Q9UP38 647 aa9.25□□□□□ -0.93
COL28A1-201ENST00000399429 CCDC88AQ3V6T2 1871 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 SYNDIG1LA6NDD5 238 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 G3V2L1 256 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 FFAR3O14843 346 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 GPR42O15529 346 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 AP2A2O94973 939 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 AP2A1O95782 977 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 IL7P13232 177 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 HTR1BP28222 390 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 RRM2P31350 389 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 ICAM3P32942 547 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 CD47Q08722 323 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 COX10Q12887 443 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 ZNF235Q14590 738 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 TSNQ15631 228 aaKnown RBP9.24□□□□□ -0.93
COL28A1-201ENST00000399429 CLPPQ16740 277 aaPredicted RBP9.24□□□□□ -0.93
COL28A1-201ENST00000399429 CES4AQ5XG92 561 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 EFCAB12Q6NXP0 572 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 PMF1Q6P1K2 205 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 TXNDC5Q8NBS9 432 aaKnown RBP9.24□□□□□ -0.93
COL28A1-201ENST00000399429 OR56A4Q8NGH8 313 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 SPATA22Q8NHS9 363 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 POF1BQ8WVV4 589 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 AURKBQ96GD4 344 aaPredicted RBP9.24□□□□□ -0.93
COL28A1-201ENST00000399429 TRIM54Q9BYV2 358 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 MKRN2Q9H000 416 aaKnown RBP9.24□□□□□ -0.93
COL28A1-201ENST00000399429 GPN2Q9H9Y4 310 aaPredicted RBP9.24□□□□□ -0.93
COL28A1-201ENST00000399429 SYTL2Q9HCH5 934 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 NT5MQ9NPB1 228 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 POLR3BQ9NW08 1133 aaPredicted RBP9.24□□□□□ -0.93
COL28A1-201ENST00000399429 FAM8A1Q9UBU6 413 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 AASSQ9UDR5 926 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 NUFIP1Q9UHK0 495 aaKnown RBP9.24□□□□□ -0.93
COL28A1-201ENST00000399429 ENPP5Q9UJA9 477 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 MKLN1Q9UL63 735 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 KDM3BQ7LBC6 1761 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 hCG_2039718K7EN88 272 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 AHSGP02765 367 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 MT-ND2P03891 347 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 PRKAR1AP10644 381 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 ARSAP15289 507 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 RPL38P63173 70 aaKnown RBP9.24□□□□□ -0.93
COL28A1-201ENST00000399429 LAMTOR4Q0VGL1 99 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 SEMA3AQ14563 771 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 ATP6AP1Q15904 470 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 C5orf22Q49AR2 442 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 BHLHB9Q6PI77 547 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 ZPBP2Q6X784 338 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 ATP6V0D2Q8N8Y2 350 aa9.24□□□□□ -0.93
COL28A1-201ENST00000399429 NDRG1Q92597 394 aaKnown RBP9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms