RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 GRIK2Q13002 908 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 ILKQ13418 452 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 PLEKHS1Q5SXH7 462 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 GPRC6AQ5T6X5 926 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 LCA5Q86VQ0 697 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 RBM12BQ8IXT5 1001 aaKnown RBP6.93□□□□□ -1.3
LIMA1-202ENST00000394943 KLHDC7BQ96G42 594 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 SERAC1Q96JX3 654 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 ELF4Q99607 663 aaPredicted RBP6.93□□□□□ -1.3
LIMA1-202ENST00000394943 MENTQ9BUN1 341 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 GPR63Q9BZJ6 419 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 CLPBQ9H078 707 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 NINJ2Q9NZG7 142 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 ATXN10Q9UBB4 475 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 COQ6Q9Y2Z9 468 aa6.93□□□□□ -1.3
LIMA1-202ENST00000394943 PCYT1BQ9Y5K3 369 aaPredicted RBP6.93□□□□□ -1.3
LIMA1-202ENST00000394943 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 E7EVH7 732 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 STK25O00506 426 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 SCAMP1O15126 338 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 USP12O75317 370 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 AVILO75366 819 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 PRAMEF1O95521 474 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 ESR1P03372 595 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 MPC1LP0DKB6 136 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 CDK4P11802 303 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 CD59P13987 128 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 XRCC1P18887 633 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-202ENST00000394943 CSRP1P21291 193 aaKnown RBP6.92□□□□□ -1.3
LIMA1-202ENST00000394943 FDXRP22570 491 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 ACP1P24666 158 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 MC4RP32245 332 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 MAGEA4P43358 317 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 CLCN7P51798 805 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 HK3P52790 923 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 SRP54P61011 504 aaKnown RBP6.92□□□□□ -1.3
LIMA1-202ENST00000394943 ARHGAP8P85298 464 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 MGAT5Q09328 741 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 CALCOCO2Q13137 446 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 DNAJC3Q13217 504 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 ACOX1Q15067 660 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 CFAP58Q5T655 872 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 METRNLQ641Q3 311 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 PRR23CQ6ZRP0 262 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 TMEFF1Q8IYR6 380 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 SLC25A41Q8N5S1 370 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 RASGEF1AQ8N9B8 481 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 AVL9Q8NBF6 648 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 KCNJ9Q92806 393 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 WRAP53Q9BUR4 548 aaKnown RBP6.92□□□□□ -1.3
LIMA1-202ENST00000394943 ZCCHC2Q9C0B9 1178 aaKnown RBP6.92□□□□□ -1.3
LIMA1-202ENST00000394943 B3GNT4Q9C0J1 378 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 SMYD2Q9NRG4 433 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 CATSPERZQ9NTU4 200 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 LGALS13Q9UHV8 139 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 LMO7DNF2Z398 122 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 KMOO15229 486 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 CD3EAPO15446 510 aaKnown RBP6.92□□□□□ -1.3
LIMA1-202ENST00000394943 PAK4O96013 591 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-202ENST00000394943 GP1BAP07359 652 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 THEGLP0DJG4 465 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 ATP1B2P14415 290 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-202ENST00000394943 ZNF8P17098 575 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-202ENST00000394943 ITGALP20701 1170 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 XPAP23025 273 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-202ENST00000394943 CNTFP26441 200 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 AOAHP28039 575 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 STX2P32856 288 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 FASLGP48023 281 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 BLKP51451 505 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 E2F2Q14209 437 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 TRIP13Q15645 432 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-202ENST00000394943 CDKL4Q5MAI5 379 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 ZNF549Q6P9A3 640 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 HEATR4Q86WZ0 1026 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 RBFAQ8N0V3 343 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 CARFQ8N187 725 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 FBXO36Q8NEA4 188 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 OR1E3Q8WZA6 343 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 MFSD3Q96ES6 412 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 FMO2Q99518 471 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 GPR22Q99680 433 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 OR52A5Q9H2C5 316 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 EIF2B4Q9UI10 523 aaKnown RBP6.92□□□□□ -1.3
LIMA1-202ENST00000394943 MEI4A8MW99 385 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 CACNB4O00305 520 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-202ENST00000394943 MAP3K13O43283 966 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 RASGRP1O95267 797 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 MATN4O95460 622 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 MYBL2P10244 700 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 SKIV2L2P42285 1042 aaKnown RBP6.92□□□□□ -1.3
LIMA1-202ENST00000394943 PXNP49023 591 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-202ENST00000394943 EPHA4P54764 986 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 TMEM115Q12893 351 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-202ENST00000394943 HLTFQ14527 1009 aaKnown RBP eCLIP6.92□□□□□ -1.3
LIMA1-202ENST00000394943 POU6F1Q14863 301 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 FASTKD3Q14CZ7 662 aaKnown RBP6.92□□□□□ -1.3
LIMA1-202ENST00000394943 UAP1Q16222 522 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-202ENST00000394943 IGF2-ASQ6U949 168 aa6.92□□□□□ -1.3
LIMA1-202ENST00000394943 SLC22A15Q8IZD6 547 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms