RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 OR10A6Q8NH74 314 aa11.77□□□□□ -0.52
SYNPO-202ENST00000394243 ROPN1LQ96C74 230 aa11.77□□□□□ -0.52
SYNPO-202ENST00000394243 LRTM1Q9HBL6 345 aa11.77□□□□□ -0.52
SYNPO-202ENST00000394243 CD320Q9NPF0 282 aa11.77□□□□□ -0.52
SYNPO-202ENST00000394243 IL17RBQ9NRM6 502 aa11.77□□□□□ -0.52
SYNPO-202ENST00000394243 ABCA8O94911 1581 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 FBXO16Q8IX29 292 aaPredicted RBP11.77□□□□□ -0.53
SYNPO-202ENST00000394243 OR4L1Q8NH43 312 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 FATE1Q969F0 183 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 LENG9Q96B70 501 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 POLR3BQ9NW08 1133 aaPredicted RBP11.77□□□□□ -0.53
SYNPO-202ENST00000394243 ST14Q9Y5Y6 855 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 BOLA2-SMG1P6H3BVE0 249 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 IL17AQ16552 155 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 OGFRL1Q5TC84 451 aaPredicted RBP11.77□□□□□ -0.53
SYNPO-202ENST00000394243 IL23RQ5VWK5 629 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 CYP4V2Q6ZWL3 525 aaPredicted RBP11.77□□□□□ -0.53
SYNPO-202ENST00000394243 ADGRA1Q86SQ6 560 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 ZDHHC21Q8IVQ6 265 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 GHDCQ8N2G8 530 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 SYNPOQ8N3V7 929 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 CRELD1Q96HD1 420 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 TLL2Q9Y6L7 1015 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 ADCY10Q96PN6 1610 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 C5orf51A6NDU8 294 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 AURKAO14965 403 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 PPM1BO75688 479 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 SLC7A1P30825 629 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 GNG2P59768 71 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 ABRQ12979 859 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 RPA4Q13156 261 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 ZPBP2Q6X784 338 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 FAM92BQ6ZTR7 304 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 C1orf186Q6ZWK4 172 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 SHC3Q92529 594 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 RNF31Q96EP0 1072 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 MTMR9Q96QG7 549 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 GPER1Q99527 375 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 MGME1Q9BQP7 344 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 CXCR2P25025 360 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 GNPDA1P46926 289 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 ENTPD1P49961 510 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 CLCN2P51788 898 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 BTBD16Q32M84 506 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 PYHIN1Q6K0P9 492 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 CHST15Q7LFX5 561 aaPredicted RBP11.77□□□□□ -0.53
SYNPO-202ENST00000394243 SNX33Q8WV41 574 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 TMEM169Q96HH4 297 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 DDX4Q9NQI0 724 aaKnown RBP11.77□□□□□ -0.53
SYNPO-202ENST00000394243 RABL2AQ9UBK7 228 aaPredicted RBP11.77□□□□□ -0.53
SYNPO-202ENST00000394243 ZNF69Q9UC07 566 aa11.77□□□□□ -0.53
SYNPO-202ENST00000394243 DNAJA2O60884 412 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 UROSP10746 265 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 CCR10P46092 362 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 CDH12P55289 794 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 PGM5Q15124 567 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 ADNP2Q6IQ32 1131 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 TXNRD3Q86VQ6 643 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 CLIP3Q96DZ5 547 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 SEMA3CQ99985 751 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 POLR2J2Q9GZM3 115 aaKnown RBP11.76□□□□□ -0.53
SYNPO-202ENST00000394243 TBC1D14Q9P2M4 693 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 IQSEC2Q5JU85 1478 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 C4orf46Q504U0 113 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 FAM76BQ5HYJ3 339 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 GPR153Q6NV75 609 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 IFNLR1Q8IU57 520 aaPredicted RBP11.76□□□□□ -0.53
SYNPO-202ENST00000394243 CRAMP1Q96RY5 1269 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 EBF4Q9BQW3 602 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 ATPIF1Q9UII2 106 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 KAT6AQ92794 2004 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 FXYD6-FXYD2A0A087WZ82 144 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 SAGP10523 405 aaPredicted RBP11.76□□□□□ -0.53
SYNPO-202ENST00000394243 SLC6A4P31645 630 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 CDH5P33151 784 aaPredicted RBP11.76□□□□□ -0.53
SYNPO-202ENST00000394243 S100A12P80511 92 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 PDSS2Q86YH6 399 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 CPT1BQ92523 772 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 FXYD6Q9H0Q3 95 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 PCDHB5Q9Y5E4 795 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 NARSO43776 548 aaKnown RBP11.76□□□□□ -0.53
SYNPO-202ENST00000394243 KIR3DL1P43629 444 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 POLR2LP62875 67 aaKnown RBP11.76□□□□□ -0.53
SYNPO-202ENST00000394243 ADAM8P78325 824 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 PFKPQ01813 784 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 ZNF697Q5TEC3 545 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 HECTD2Q5U5R9 776 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 PRAMEF17Q5VTA0 474 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 ZNF280DQ6N043 979 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 HAGHLQ6PII5 290 aaPredicted RBP11.76□□□□□ -0.53
SYNPO-202ENST00000394243 SMG8Q8ND04 991 aaKnown RBP11.76□□□□□ -0.53
SYNPO-202ENST00000394243 P2RY11Q96G91 374 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 GTPBP2Q9BX10 602 aaKnown RBP11.76□□□□□ -0.53
SYNPO-202ENST00000394243 SSU72Q9NP77 194 aaKnown RBP11.76□□□□□ -0.53
SYNPO-202ENST00000394243 SPATA7Q9P0W8 599 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 RABL2BQ9UNT1 228 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 CFL2Q9Y281 166 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 ZNF286BP0CG31 522 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 MTA1Q13330 715 aa11.76□□□□□ -0.53
SYNPO-202ENST00000394243 COLGALT2Q8IYK4 626 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms