RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 RHEBL1Q8TAI7 183 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 PTERQ96BW5 349 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 EXOC2Q96KP1 924 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 SPOCK3Q9BQ16 436 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 ADGRE3Q9BY15 652 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 SPAG4Q9NPE6 437 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 MARCH5Q9NX47 278 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 AGO1Q9UL18 857 aaKnown RBP9.58□□□□□ -0.88
COL6A3-204ENST00000392003 FAM50BQ9Y247 325 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 PLXNA3P51805 1871 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 STX7O15400 261 aaKnown RBP9.58□□□□□ -0.88
COL6A3-204ENST00000392003 KDELR3O43731 214 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 PARNO95453 639 aaKnown RBP9.58□□□□□ -0.88
COL6A3-204ENST00000392003 LPOP22079 712 aaPredicted RBP9.58□□□□□ -0.88
COL6A3-204ENST00000392003 RPS24P62847 133 aaKnown RBP9.58□□□□□ -0.88
COL6A3-204ENST00000392003 MS4A2Q01362 244 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 ANKDD1AQ495B1 522 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 NKAPQ8N5F7 415 aaKnown RBP9.58□□□□□ -0.88
COL6A3-204ENST00000392003 EFHBQ8N7U6 833 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 LINC00469Q8N7U9 141 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 TUBGCP3Q96CW5 907 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 ASB9Q96DX5 294 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 CACNA2D2Q9NY47 1150 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 SUCOQ9UBS9 1254 aaKnown RBP9.58□□□□□ -0.88
COL6A3-204ENST00000392003 FNDC3AQ9Y2H6 1198 aaKnown RBP9.58□□□□□ -0.88
COL6A3-204ENST00000392003 MTF2Q9Y483 593 aaPredicted RBP9.58□□□□□ -0.88
COL6A3-204ENST00000392003 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.58□□□□□ -0.88
COL6A3-204ENST00000392003 ILVBLA1L0T0 632 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 TTC34A8MYJ7 566 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 FBP2O00757 339 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 CDK2AP1O14519 115 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 ANGPT2O15123 496 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 RNASEH1O60930 286 aaKnown RBP9.58□□□□□ -0.88
COL6A3-204ENST00000392003 SEC24DO94855 1032 aaPredicted RBP9.58□□□□□ -0.88
COL6A3-204ENST00000392003 HOXD9P28356 352 aaPredicted RBP9.58□□□□□ -0.88
COL6A3-204ENST00000392003 KCNC1P48547 511 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 NAA20P61599 178 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 PTPRNQ16849 979 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 SLC39A5Q6ZMH5 540 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 EFL1Q7Z2Z2 1120 aaKnown RBP9.58□□□□□ -0.88
COL6A3-204ENST00000392003 SPNS2Q8IVW8 549 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 TRPC4APQ8TEL6 797 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 TOP1MTQ969P6 601 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 PBXIP1Q96AQ6 731 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 PLD4Q96BZ4 506 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 MYEOVQ96EZ4 313 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 ZNF558Q96NG5 402 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 TTLL2Q9BWV7 592 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 PDFQ9HBH1 243 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 DDX18Q9NVP1 670 aaKnown RBP9.58□□□□□ -0.88
COL6A3-204ENST00000392003 TRMT6Q9UJA5 497 aaKnown RBP9.58□□□□□ -0.88
COL6A3-204ENST00000392003 COMMD10Q9Y6G5 202 aa9.58□□□□□ -0.88
COL6A3-204ENST00000392003 GOLGA8CPA6NN73 597 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 E7ENX8 843 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 SNX2O60749 519 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 VPS4BO75351 444 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 OR6B1O95007 311 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 SIX3O95343 332 aaPredicted RBP9.57□□□□□ -0.88
COL6A3-204ENST00000392003 URODP06132 367 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 LBPP18428 481 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 CORO1AP31146 461 aaKnown RBP9.57□□□□□ -0.88
COL6A3-204ENST00000392003 SLC6A4P31645 630 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 ACADVLP49748 655 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 CHN2P52757 468 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 COL19A1Q14993 1142 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 ZRANB3Q5FWF4 1079 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 RSPO2Q6UXX9 243 aaPredicted RBP9.57□□□□□ -0.88
COL6A3-204ENST00000392003 MIER2Q8N344 545 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 FAM156AQ8NDB6 213 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 SUN5Q8TC36 379 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 TWIST2Q8WVJ9 160 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.57□□□□□ -0.88
COL6A3-204ENST00000392003 KIAA1191Q96A73 305 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 AKTIPQ9H8T0 292 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 TNFRSF12AQ9NP84 129 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 SMPD4Q9NXE4 827 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 NDUFAF1Q9Y375 327 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 GPSM3Q9Y4H4 160 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 PCDHGA7Q9Y5G6 932 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 A0A1B0GVM2 712 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 NOTOA8MTQ0 251 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 BBIP1A8MTZ0 92 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 E5RI56 91 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 NR5A2O00482 541 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 TSPAN3O60637 253 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 KERAO60938 352 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 CDK14O94921 469 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 WISP3O95389 354 aaPredicted RBP9.57□□□□□ -0.88
COL6A3-204ENST00000392003 EEF1DP29692 281 aaKnown RBP9.57□□□□□ -0.88
COL6A3-204ENST00000392003 DPP6P42658 865 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 TTPAP49638 278 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 SUOXP51687 545 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 PTPN5P54829 565 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 EMP3P54852 163 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 TRAP1Q12931 704 aaKnown RBP9.57□□□□□ -0.88
COL6A3-204ENST00000392003 PLD1Q13393 1074 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 SEMA3AQ14563 771 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 OR4D1Q15615 310 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 TYSND1Q2T9J0 566 aa9.57□□□□□ -0.88
COL6A3-204ENST00000392003 C5orf22Q49AR2 442 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms