RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 CCL23P55773 120 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 GPR158Q5T848 1215 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 PPP1R26Q5T8A7 1209 aaPredicted RBP12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 PLPP4Q5VZY2 271 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 PSRC1Q6PGN9 363 aaPredicted RBP12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 PLET1Q6UQ28 207 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 CHRDL2Q6WN34 429 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 MSANTD1Q6ZTZ1 278 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 STRADAQ7RTN6 431 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 OR2T34Q8NGX1 318 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 OR2T3Q8NH03 318 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 RNF19AQ9NV58 838 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 CLEC4AQ9UMR7 237 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 TISP43B9A030 160 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 REM1O75628 298 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 RASGRP1O95267 797 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 NFATC1O95644 943 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 FMO1Q01740 532 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 THOC7Q6I9Y2 204 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 VSIG10LQ86VR7 867 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 CADM2Q8N3J6 435 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 CCDC115Q96NT0 180 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 GAS2L1Q99501 681 aaPredicted RBP12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 ACAT2Q9BWD1 397 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 MIOSQ9NXC5 875 aa12.71□□□□□ -0.37
CCDC88C-204ENST00000389857 DISP2A7MBM2 1401 aa12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 VWDEQ8N2E2 1590 aa12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 A0A1W2PQH9 124 aa12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 TCRBV9S1A1TA0A576 114 aa12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 PTX3P26022 381 aaPredicted RBP12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 TNFSF9P41273 254 aa12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 SEMA5AQ13591 1074 aa12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 TEAD4Q15561 434 aa12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 OR2L3Q8NG85 312 aa12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 ATXN10Q9UBB4 475 aa12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 HES2Q9Y543 173 aa12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 RGS8P57771 180 aaPredicted RBP12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 ZFP69Q49AA0 526 aa12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 MED27Q6P2C8 311 aa12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 RAB43Q86YS6 212 aa12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 PDPRQ8NCN5 879 aa12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 LNX1Q8TBB1 728 aaPredicted RBP12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 HPS1Q92902 700 aa12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 TCF25Q9BQ70 676 aa12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 LHX5Q9H2C1 402 aa12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 GLOD4Q9HC38 313 aa12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 TIMMDC1Q9NPL8 285 aa12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 HBS1LQ9Y450 684 aaKnown RBP12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 HEBP2Q9Y5Z4 205 aa12.71□□□□□ -0.38
CCDC88C-204ENST00000389857 LAG3P18627 525 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 DDX6P26196 483 aaKnown RBP eCLIP12.7□□□□□ -0.385e-6■■■■■ 46.6
CCDC88C-204ENST00000389857 GNALP38405 381 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 EML3Q32P44 896 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 MED28Q9H204 178 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 CNTNAP1P78357 1384 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 PITPNAQ00169 270 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 PUS10Q3MIT2 529 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 EARS2Q5JPH6 523 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 PRAMEF19Q5SWL8 479 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 RNASEH2BQ5TBB1 312 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 ZNF662Q6ZS27 426 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 GET4Q7L5D6 327 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 GIPC3Q8TF64 312 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 AGXT2Q9BYV1 514 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 PCBD2Q9H0N5 130 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 NOL11Q9H8H0 719 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 EURLQ9NYK6 297 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 RCOR3Q9P2K3 495 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 ZNF221Q9UK13 617 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 ATP6AP2A0A1C7CYW4 349 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 ELOVL7A1L3X0 281 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 PDCD5O14737 125 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 NOS1APO75052 506 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 ATP6AP2O75787 350 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 TPSB2P20231 275 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 CAPSQ13938 189 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 ACAP2Q15057 778 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 TPSAB1Q15661 275 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 ATP6V1C2Q8NEY4 427 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 LMLNQ96KR4 655 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 MAP4K5Q9Y4K4 846 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 IPO13O94829 963 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 ZBTB11O95625 1053 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 PRNPP04156 253 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 VARSP26640 1264 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 CCR10P46092 362 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 NOMO3P69849 1222 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 PCDH1Q08174 1060 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 CERCAMQ5T4B2 595 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 PPTC7Q8NI37 304 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 HCAR2Q8TDS4 363 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 CNOT6Q9ULM6 557 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 RAB26Q9ULW5 256 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 AVPR1BP47901 424 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 GLYATQ6IB77 296 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 MSANTD2Q6P1R3 559 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 RBM23Q86U06 439 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 PACS2Q86VP3 889 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 SLC30A8Q8IWU4 369 aa12.7□□□□□ -0.38
CCDC88C-204ENST00000389857 MKL1Q969V6 931 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms