RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 H0Y858 1186 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 ANP32DO95626 131 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 TOP3BO95985 862 aaKnown RBP18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 EPHX1P07099 455 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 CCDC166P0CW27 439 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 AOC1P19801 751 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 LHCGRP22888 699 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 CDKN2DP55273 166 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 ZNF549Q6P9A3 640 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 PIANPQ8IYJ0 282 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 TEX9Q8N6V9 391 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 HEXDCQ8WVB3 486 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 DNASE1L2Q92874 299 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 UBXN10Q96LJ8 280 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 RILPQ96NA2 401 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 MCM8Q9UJA3 840 aa18.05■□□□□ 0.48
CCDC88C-203ENST00000389856 A8MX80 341 aa18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 TRIM13O60858 407 aa18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 PEX11AO75192 247 aa18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 C1SP09871 688 aa18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 HLA-EP13747 358 aa18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 ACRV1P26436 265 aa18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 RAP1GDS1P52306 607 aa18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 ATP6V0D1P61421 351 aa18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 CSHL1Q14406 222 aa18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 CHRNA6Q15825 494 aa18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 ZNF284Q2VY69 593 aa18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 HSF5Q4G112 596 aaPredicted RBP18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 PTRHD1Q6GMV3 140 aaKnown RBP18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 TRMT11Q7Z4G4 463 aaKnown RBP18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 C10orf107Q8IVU9 208 aa18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 NRSN1Q8IZ57 195 aa18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 NXPE1Q8N323 547 aa18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 FSTL5Q8N475 847 aaPredicted RBP18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 ZNF366Q8N895 744 aa18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 NXNL1Q96CM4 212 aa18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 MIPEPQ99797 713 aa18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 CCDC106Q9BWC9 280 aa18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 FAM83DQ9H4H8 585 aa18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 MTG2Q9H4K7 406 aa18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 FBRSQ9HAH7 460 aa18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 ZNF358Q9NW07 568 aa18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 TAS2R1Q9NYW7 299 aa18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 EPB41L3Q9Y2J2 1087 aaPredicted RBP18.04■□□□□ 0.48
CCDC88C-203ENST00000389856 SYNCRIPO60506 623 aaKnown RBP18.03■□□□□ 0.48
CCDC88C-203ENST00000389856 ELFN1P0C7U0 828 aa18.03■□□□□ 0.48
CCDC88C-203ENST00000389856 MMP12P39900 470 aa18.03■□□□□ 0.48
CCDC88C-203ENST00000389856 IL12RB1P42701 662 aa18.03■□□□□ 0.48
CCDC88C-203ENST00000389856 NSG1P42857 185 aa18.03■□□□□ 0.48
CCDC88C-203ENST00000389856 MESP2Q0VG99 397 aa18.03■□□□□ 0.48
CCDC88C-203ENST00000389856 ZNF460Q14592 562 aa18.03■□□□□ 0.48
CCDC88C-203ENST00000389856 PARS2Q7L3T8 475 aaKnown RBP18.03■□□□□ 0.48
CCDC88C-203ENST00000389856 ALYREFQ86V81 257 aaKnown RBP18.03■□□□□ 0.48
CCDC88C-203ENST00000389856 RALGPS2Q86X27 583 aaPredicted RBP18.03■□□□□ 0.48
CCDC88C-203ENST00000389856 CHPFQ8IZ52 775 aa18.03■□□□□ 0.48
CCDC88C-203ENST00000389856 ZNF513Q8N8E2 541 aaPredicted RBP18.03■□□□□ 0.48
CCDC88C-203ENST00000389856 GPR26Q8NDV2 337 aa18.03■□□□□ 0.48
CCDC88C-203ENST00000389856 MSANTD3Q96H12 275 aa18.03■□□□□ 0.48
CCDC88C-203ENST00000389856 ZSCAN5AQ9BUG6 496 aa18.03■□□□□ 0.48
CCDC88C-203ENST00000389856 RPP25Q9BUL9 199 aaKnown RBP18.03■□□□□ 0.48
CCDC88C-203ENST00000389856 C20orf27Q9GZN8 174 aa18.03■□□□□ 0.48
CCDC88C-203ENST00000389856 IGSF5Q9NSI5 407 aa18.03■□□□□ 0.48
CCDC88C-203ENST00000389856 ZDHHC3Q9NYG2 299 aa18.03■□□□□ 0.48
CCDC88C-203ENST00000389856 XPR1Q9UBH6 696 aa18.03■□□□□ 0.48
CCDC88C-203ENST00000389856 OAS3Q9Y6K5 1087 aaKnown RBP18.03■□□□□ 0.48
CCDC88C-203ENST00000389856 STON1Q9Y6Q2 735 aa18.03■□□□□ 0.48
CCDC88C-203ENST00000389856 TICRRQ7Z2Z1 1910 aa18.03■□□□□ 0.48
CCDC88C-203ENST00000389856 AGAP14A8MT82 685 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 CFAP99D6REC4 459 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 H3BQ06 376 aaPredicted RBP18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 WISP3O95389 354 aaPredicted RBP18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 PRSS56P0CW18 603 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 ZNF37AP17032 561 aaPredicted RBP18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 CHRM3P20309 590 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 KCNA4P22459 653 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 GCKP35557 465 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 GLRBP48167 497 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 CDKN1CP49918 316 aaPredicted RBP18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 GALK1P51570 392 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 ENPP2Q13822 863 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 CRY1Q16526 586 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 LIPMQ5VYY2 423 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 METTL21CQ5VZV1 264 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 EGFLAMQ63HQ2 1017 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 ZCCHC23Q6ZST2 131 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 SLC22A9Q8IVM8 553 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 CHFRQ96EP1 664 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 RSRC1Q96IZ7 334 aaKnown RBP18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 BIRC8Q96P09 236 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 COPS8Q99627 209 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 SPATA16Q9BXB7 569 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 HDAC8Q9BY41 377 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 P2RY12Q9H244 342 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 DENND2DQ9H6A0 471 aaPredicted RBP18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 SMOXQ9NWM0 555 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 OXSMQ9NWU1 459 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 KCTD5Q9NXV2 234 aa18.02■□□□□ 0.48
CCDC88C-203ENST00000389856 G3V2L1 256 aa18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 GAPDHSO14556 408 aaPredicted RBP18.01■□□□□ 0.47
CCDC88C-203ENST00000389856 ADH1BP00325 375 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 457.5 ms