RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 RPS17P08708 135 aaKnown RBP21.37■■□□□ 1.01
TRIM54-202ENST00000380075 MZF1P28698 734 aaPredicted RBP21.37■■□□□ 1.01
TRIM54-202ENST00000380075 ADAM15Q13444 863 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 CDH18Q13634 790 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 LINGO4Q6UY18 593 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 PDSS2Q86YH6 399 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 HIPK4Q8NE63 616 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 HMGCLL1Q8TB92 370 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 TBRG4Q969Z0 631 aaKnown RBP eCLIP21.37■■□□□ 1.01
TRIM54-202ENST00000380075 CACNA2D2Q9NY47 1150 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 VPS51Q9UID3 782 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 ADAMTS6Q9UKP5 1117 aa21.37■■□□□ 1.01
TRIM54-202ENST00000380075 GREM1O60565 184 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 XRCC1P18887 633 aaPredicted RBP21.36■■□□□ 1.01
TRIM54-202ENST00000380075 CDH13P55290 713 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 PSME3P61289 254 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 CLCQ05315 142 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 LRP8Q14114 963 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 ZRANB3Q5FWF4 1079 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 REP15Q6BDI9 236 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 PSAPL1Q6NUJ1 521 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 CERS6Q6ZMG9 384 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 PQLC1Q8N2U9 271 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 TWIST2Q8WVJ9 160 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 FUBP1Q96AE4 644 aaKnown RBP21.36■■□□□ 1.01
TRIM54-202ENST00000380075 ALG14Q96F25 216 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 SUCOQ9UBS9 1254 aaKnown RBP21.36■■□□□ 1.01
TRIM54-202ENST00000380075 LSM7Q9UK45 103 aaKnown RBP21.36■■□□□ 1.01
TRIM54-202ENST00000380075 ZNF510Q9Y2H8 683 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 ECI2O75521 394 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 SIX3O95343 332 aaPredicted RBP21.36■■□□□ 1.01
TRIM54-202ENST00000380075 EEF1DP29692 281 aaKnown RBP21.36■■□□□ 1.01
TRIM54-202ENST00000380075 DPP6P42658 865 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 MAPK8P45983 427 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 IL2P60568 153 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 CACNG1Q06432 222 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 GEN1Q17RS7 908 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 ARMC12Q5T9G4 340 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 RETSATQ6NUM9 610 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 EP400NLQ6ZTU2 488 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 METTL3Q86U44 580 aaKnown RBP21.36■■□□□ 1.01
TRIM54-202ENST00000380075 PIANPQ8IYJ0 282 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 CYP2S1Q96SQ9 504 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 C2orf49Q9BVC5 232 aaPredicted RBP21.36■■□□□ 1.01
TRIM54-202ENST00000380075 NUSAP1Q9BXS6 441 aaKnown RBP21.36■■□□□ 1.01
TRIM54-202ENST00000380075 CLDND1Q9NY35 253 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 IL17CQ9P0M4 197 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 EPS15L1Q9UBC2 864 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 SCOCQ9UIL1 159 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 ZNF711Q9Y462 761 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 PCDHB1Q9Y5F3 818 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 PCDHGA7Q9Y5G6 932 aa21.36■■□□□ 1.01
TRIM54-202ENST00000380075 ANAPC1Q9H1A4 1944 aa21.35■■□□□ 1.01
TRIM54-202ENST00000380075 MLYCDO95822 493 aa21.35■■□□□ 1.01
TRIM54-202ENST00000380075 TSPAN8P19075 237 aa21.35■■□□□ 1.01
TRIM54-202ENST00000380075 HMGCLP35914 325 aa21.35■■□□□ 1.01
TRIM54-202ENST00000380075 CSKP41240 450 aa21.35■■□□□ 1.01
TRIM54-202ENST00000380075 PKNOX1P55347 436 aa21.35■■□□□ 1.01
TRIM54-202ENST00000380075 TSNQ15631 228 aaKnown RBP21.35■■□□□ 1.01
TRIM54-202ENST00000380075 ADAMTS19Q8TE59 1207 aa21.35■■□□□ 1.01
TRIM54-202ENST00000380075 GATA6Q92908 595 aa21.35■■□□□ 1.01
TRIM54-202ENST00000380075 ASB9Q96DX5 294 aa21.35■■□□□ 1.01
TRIM54-202ENST00000380075 IL21Q9HBE4 155 aa21.35■■□□□ 1.01
TRIM54-202ENST00000380075 PFDN4Q9NQP4 134 aa21.35■■□□□ 1.01
TRIM54-202ENST00000380075 CCDC167Q9P0B6 97 aa21.35■■□□□ 1.01
TRIM54-202ENST00000380075 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP21.34■■□□□ 1.01
TRIM54-202ENST00000380075 NRP2O60462 931 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 HDCP19113 662 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 CSNK1DP48730 415 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 DLX2Q07687 328 aaPredicted RBP21.34■■□□□ 1.01
TRIM54-202ENST00000380075 TRIP10Q15642 601 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 CTSL3PQ5NE16 218 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 TMEM184AQ6ZMB5 413 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 RIN3Q8TB24 985 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 CD200R1Q8TD46 325 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 ACDQ96AP0 544 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 ROPN1LQ96C74 230 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 MYO19Q96H55 970 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 AKTIPQ9H8T0 292 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 ZNF334Q9HCZ1 680 aaPredicted RBP21.34■■□□□ 1.01
TRIM54-202ENST00000380075 CPQQ9Y646 472 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 SLC30A1Q9Y6M5 507 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 BTN3A1O00481 513 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 ACOT8O14734 319 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 PGLSO95336 258 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 CDKN1CP49918 316 aaPredicted RBP21.34■■□□□ 1.01
TRIM54-202ENST00000380075 COL19A1Q14993 1142 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 SKIV2LQ15477 1246 aaKnown RBP21.34■■□□□ 1.01
TRIM54-202ENST00000380075 MPP7Q5T2T1 576 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 OGFRL1Q5TC84 451 aaPredicted RBP21.34■■□□□ 1.01
TRIM54-202ENST00000380075 TMEM154Q6P9G4 183 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 CPXM2Q8N436 756 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 ARL14EPQ8N8R7 260 aaPredicted RBP21.34■■□□□ 1.01
TRIM54-202ENST00000380075 PCYOX1LQ8NBM8 494 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 CATSPER1Q8NEC5 780 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 TRPC4APQ8TEL6 797 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 C3orf30Q96M34 536 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 GPR63Q9BZJ6 419 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 SPAG4Q9NPE6 437 aa21.34■■□□□ 1.01
TRIM54-202ENST00000380075 SPATS2LQ9NUQ6 558 aaKnown RBP21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms